Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC17.87■□□□□ 0.45
TTC28Q96AY4 ANKRD19P-201ENST00000338192 862 ntBASIC17.87■□□□□ 0.45
TTC28Q96AY4 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TTC28Q96AY4 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TTC28Q96AY4 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
TTC28Q96AY4 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
TTC28Q96AY4 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC17.86■□□□□ 0.45
TTC28Q96AY4 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TTC28Q96AY4 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.86■□□□□ 0.45
TTC28Q96AY4 AL391825.1-201ENST00000457671 1364 ntBASIC17.86■□□□□ 0.45
TTC28Q96AY4 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
TTC28Q96AY4 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC17.86■□□□□ 0.45
TTC28Q96AY4 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TTC28Q96AY4 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TTC28Q96AY4 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TTC28Q96AY4 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
TTC28Q96AY4 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.86■□□□□ 0.45
TTC28Q96AY4 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.86■□□□□ 0.45
TTC28Q96AY4 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TTC28Q96AY4 AC112907.3-201ENST00000577781 2400 ntBASIC17.85■□□□□ 0.45
TTC28Q96AY4 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.85■□□□□ 0.45
TTC28Q96AY4 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.85■□□□□ 0.45
TTC28Q96AY4 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TTC28Q96AY4 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TTC28Q96AY4 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.85■□□□□ 0.45
TTC28Q96AY4 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
TTC28Q96AY4 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
TTC28Q96AY4 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
TTC28Q96AY4 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TTC28Q96AY4 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC17.85■□□□□ 0.45
TTC28Q96AY4 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TTC28Q96AY4 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
TTC28Q96AY4 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC17.85■□□□□ 0.45
TTC28Q96AY4 AP005482.1-201ENST00000563722 1273 ntBASIC17.85■□□□□ 0.45
TTC28Q96AY4 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC17.85■□□□□ 0.45
TTC28Q96AY4 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC17.85■□□□□ 0.45
TTC28Q96AY4 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC17.85■□□□□ 0.45
TTC28Q96AY4 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.85■□□□□ 0.45
TTC28Q96AY4 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
TTC28Q96AY4 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
TTC28Q96AY4 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TTC28Q96AY4 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC17.85■□□□□ 0.45
TTC28Q96AY4 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
TTC28Q96AY4 RN7SL752P-201ENST00000463779 287 ntBASIC17.84■□□□□ 0.45
TTC28Q96AY4 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC17.84■□□□□ 0.45
TTC28Q96AY4 AC008735.3-201ENST00000596646 500 ntBASIC17.84■□□□□ 0.45
TTC28Q96AY4 MIR6080-201ENST00000617359 66 ntBASIC17.84■□□□□ 0.45
TTC28Q96AY4 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
TTC28Q96AY4 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC17.84■□□□□ 0.45
TTC28Q96AY4 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC17.84■□□□□ 0.45
TTC28Q96AY4 STK25-234ENST00000535007 2459 ntTSL 2 BASIC17.84■□□□□ 0.45
TTC28Q96AY4 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TTC28Q96AY4 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
TTC28Q96AY4 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC17.84■□□□□ 0.45
TTC28Q96AY4 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC17.84■□□□□ 0.45
TTC28Q96AY4 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC17.84■□□□□ 0.45
TTC28Q96AY4 AC009477.1-201ENST00000452936 217 ntBASIC17.84■□□□□ 0.45
TTC28Q96AY4 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC17.84■□□□□ 0.45
TTC28Q96AY4 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC17.84■□□□□ 0.45
TTC28Q96AY4 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
TTC28Q96AY4 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC17.84■□□□□ 0.45
TTC28Q96AY4 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC17.84■□□□□ 0.45
TTC28Q96AY4 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
TTC28Q96AY4 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
TTC28Q96AY4 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TTC28Q96AY4 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TTC28Q96AY4 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TTC28Q96AY4 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
TTC28Q96AY4 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC17.83■□□□□ 0.45
TTC28Q96AY4 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
TTC28Q96AY4 PTCHD3P3-201ENST00000403073 906 ntBASIC17.83■□□□□ 0.45
TTC28Q96AY4 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.83■□□□□ 0.45
TTC28Q96AY4 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC17.83■□□□□ 0.45
TTC28Q96AY4 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC17.83■□□□□ 0.45
TTC28Q96AY4 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.83■□□□□ 0.45
TTC28Q96AY4 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.83■□□□□ 0.45
TTC28Q96AY4 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
TTC28Q96AY4 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TTC28Q96AY4 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
TTC28Q96AY4 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
TTC28Q96AY4 AC132938.6-201ENST00000623828 1655 ntBASIC17.83■□□□□ 0.44
TTC28Q96AY4 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC17.83■□□□□ 0.44
TTC28Q96AY4 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TTC28Q96AY4 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TTC28Q96AY4 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
TTC28Q96AY4 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC17.83■□□□□ 0.44
TTC28Q96AY4 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.83■□□□□ 0.44
TTC28Q96AY4 AC073592.8-201ENST00000624126 511 ntBASIC17.83■□□□□ 0.44
TTC28Q96AY4 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TTC28Q96AY4 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TTC28Q96AY4 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TTC28Q96AY4 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TTC28Q96AY4 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TTC28Q96AY4 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.83■□□□□ 0.44
TTC28Q96AY4 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.83■□□□□ 0.44
TTC28Q96AY4 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TTC28Q96AY4 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TTC28Q96AY4 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
TTC28Q96AY4 AC140658.5-201ENST00000438532 169 ntBASIC17.82■□□□□ 0.44
TTC28Q96AY4 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms