Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 SPDYE21P-201ENST00000413323 827 ntBASIC17.28■□□□□ 0.36
LMX1AQ8TE12 COX10-202ENST00000429152 875 ntTSL 2 BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 MIR1199-201ENST00000621445 119 ntBASIC17.28■□□□□ 0.36
LMX1AQ8TE12 AC073592.4-201ENST00000623827 446 ntBASIC17.28■□□□□ 0.36
LMX1AQ8TE12 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 AC093677.2-201ENST00000600169 1863 ntBASIC17.28■□□□□ 0.36
LMX1AQ8TE12 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LMX1AQ8TE12 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LMX1AQ8TE12 AC135776.1-201ENST00000319817 2481 ntBASIC17.27■□□□□ 0.36
LMX1AQ8TE12 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.27■□□□□ 0.36
LMX1AQ8TE12 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
LMX1AQ8TE12 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LMX1AQ8TE12 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LMX1AQ8TE12 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LMX1AQ8TE12 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LMX1AQ8TE12 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.27■□□□□ 0.36
LMX1AQ8TE12 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
LMX1AQ8TE12 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.27■□□□□ 0.36
LMX1AQ8TE12 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LMX1AQ8TE12 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.27■□□□□ 0.36
LMX1AQ8TE12 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC17.27■□□□□ 0.36
LMX1AQ8TE12 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.27■□□□□ 0.36
LMX1AQ8TE12 AC006557.2-201ENST00000592985 1240 ntBASIC17.27■□□□□ 0.36
LMX1AQ8TE12 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
LMX1AQ8TE12 AC116407.2-201ENST00000613639 860 ntBASIC17.27■□□□□ 0.36
LMX1AQ8TE12 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LMX1AQ8TE12 FAM197Y3-203ENST00000618346 717 ntBASIC17.27■□□□□ 0.36
LMX1AQ8TE12 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
LMX1AQ8TE12 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
LMX1AQ8TE12 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
LMX1AQ8TE12 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
LMX1AQ8TE12 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
LMX1AQ8TE12 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LMX1AQ8TE12 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
LMX1AQ8TE12 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
LMX1AQ8TE12 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
LMX1AQ8TE12 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LMX1AQ8TE12 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
LMX1AQ8TE12 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
LMX1AQ8TE12 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 AL020989.1-201ENST00000422979 469 ntBASIC17.26■□□□□ 0.35
LMX1AQ8TE12 AL591424.1-201ENST00000442569 1213 ntBASIC17.26■□□□□ 0.35
LMX1AQ8TE12 KRT18P3-201ENST00000451602 1288 ntBASIC17.26■□□□□ 0.35
LMX1AQ8TE12 PRYP5-201ENST00000451909 266 ntBASIC17.26■□□□□ 0.35
LMX1AQ8TE12 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 SIGLEC16-201ENST00000599858 1437 ntBASIC17.26■□□□□ 0.35
LMX1AQ8TE12 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LMX1AQ8TE12 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms