Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS53Q5VIR6 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC21.49■■□□□ 1.03
VPS53Q5VIR6 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC21.49■■□□□ 1.03
VPS53Q5VIR6 AC112698.1-201ENST00000510299 916 ntBASIC21.49■■□□□ 1.03
VPS53Q5VIR6 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS53Q5VIR6 AL353801.3-201ENST00000609898 542 ntBASIC21.49■■□□□ 1.03
VPS53Q5VIR6 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC21.49■■□□□ 1.03
VPS53Q5VIR6 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS53Q5VIR6 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS53Q5VIR6 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
VPS53Q5VIR6 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VPS53Q5VIR6 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VPS53Q5VIR6 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC21.49■■□□□ 1.03
VPS53Q5VIR6 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
VPS53Q5VIR6 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS53Q5VIR6 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS53Q5VIR6 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS53Q5VIR6 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS53Q5VIR6 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC21.48■■□□□ 1.03
VPS53Q5VIR6 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
VPS53Q5VIR6 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC21.48■■□□□ 1.03
VPS53Q5VIR6 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
VPS53Q5VIR6 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
VPS53Q5VIR6 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC21.48■■□□□ 1.03
VPS53Q5VIR6 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS53Q5VIR6 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS53Q5VIR6 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC21.48■■□□□ 1.03
VPS53Q5VIR6 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC21.48■■□□□ 1.03
VPS53Q5VIR6 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
VPS53Q5VIR6 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
VPS53Q5VIR6 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS53Q5VIR6 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS53Q5VIR6 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
VPS53Q5VIR6 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS53Q5VIR6 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS53Q5VIR6 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
VPS53Q5VIR6 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC21.47■■□□□ 1.03
VPS53Q5VIR6 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS53Q5VIR6 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC21.47■■□□□ 1.03
VPS53Q5VIR6 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS53Q5VIR6 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
VPS53Q5VIR6 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS53Q5VIR6 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC21.47■■□□□ 1.03
VPS53Q5VIR6 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
VPS53Q5VIR6 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS53Q5VIR6 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC21.47■■□□□ 1.03
VPS53Q5VIR6 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS53Q5VIR6 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
VPS53Q5VIR6 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS53Q5VIR6 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC21.47■■□□□ 1.03
VPS53Q5VIR6 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS53Q5VIR6 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS53Q5VIR6 DRAXINP1-201ENST00000437611 948 ntBASIC21.47■■□□□ 1.03
VPS53Q5VIR6 CIB2-208ENST00000560618 804 ntTSL 2 BASIC21.47■■□□□ 1.03
VPS53Q5VIR6 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
VPS53Q5VIR6 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC21.47■■□□□ 1.03
VPS53Q5VIR6 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
VPS53Q5VIR6 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC21.47■■□□□ 1.03
VPS53Q5VIR6 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS53Q5VIR6 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
VPS53Q5VIR6 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC21.47■■□□□ 1.03
VPS53Q5VIR6 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
VPS53Q5VIR6 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC21.46■■□□□ 1.03
VPS53Q5VIR6 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
VPS53Q5VIR6 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
VPS53Q5VIR6 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
VPS53Q5VIR6 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS53Q5VIR6 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
VPS53Q5VIR6 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC21.46■■□□□ 1.03
VPS53Q5VIR6 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
VPS53Q5VIR6 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS53Q5VIR6 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS53Q5VIR6 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS53Q5VIR6 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
VPS53Q5VIR6 TOB2P1-201ENST00000469761 992 ntBASIC21.46■■□□□ 1.03
VPS53Q5VIR6 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
VPS53Q5VIR6 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC21.46■■□□□ 1.03
VPS53Q5VIR6 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
VPS53Q5VIR6 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS53Q5VIR6 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC21.46■■□□□ 1.03
VPS53Q5VIR6 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC21.46■■□□□ 1.03
VPS53Q5VIR6 AC005336.2-201ENST00000593183 939 ntBASIC21.46■■□□□ 1.03
VPS53Q5VIR6 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
VPS53Q5VIR6 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
VPS53Q5VIR6 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC21.46■■□□□ 1.03
VPS53Q5VIR6 ANKRD20A8P-203ENST00000641373 517 ntBASIC21.46■■□□□ 1.03
VPS53Q5VIR6 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC21.46■■□□□ 1.03
VPS53Q5VIR6 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS53Q5VIR6 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS53Q5VIR6 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS53Q5VIR6 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS53Q5VIR6 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS53Q5VIR6 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC21.45■■□□□ 1.03
VPS53Q5VIR6 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC21.45■■□□□ 1.03
VPS53Q5VIR6 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
VPS53Q5VIR6 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
VPS53Q5VIR6 AC012317.2-201ENST00000623305 2251 ntBASIC21.45■■□□□ 1.02
VPS53Q5VIR6 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VPS53Q5VIR6 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VPS53Q5VIR6 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms