Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 WRB-204ENST00000398753 699 ntTSL 3 BASIC12.62□□□□□ -0.39
COL7A1Q02388 DDT-204ENST00000404092 805 ntTSL 3 BASIC12.62□□□□□ -0.39
COL7A1Q02388 AC022494.1-201ENST00000466044 728 ntBASIC12.62□□□□□ -0.39
COL7A1Q02388 AC069335.1-201ENST00000489972 472 ntBASIC12.62□□□□□ -0.39
COL7A1Q02388 KRT8P48-201ENST00000515599 1220 ntBASIC12.62□□□□□ -0.39
COL7A1Q02388 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC12.62□□□□□ -0.39
COL7A1Q02388 RPL28-209ENST00000560055 670 ntTSL 3 BASIC12.62□□□□□ -0.39
COL7A1Q02388 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC12.62□□□□□ -0.39
COL7A1Q02388 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL7A1Q02388 GID4-202ENST00000376345 1391 ntTSL 3 BASIC12.62□□□□□ -0.39
COL7A1Q02388 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
COL7A1Q02388 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
COL7A1Q02388 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL7A1Q02388 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
COL7A1Q02388 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
COL7A1Q02388 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
COL7A1Q02388 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL7A1Q02388 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL7A1Q02388 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL7A1Q02388 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL7A1Q02388 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL7A1Q02388 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
COL7A1Q02388 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL7A1Q02388 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL7A1Q02388 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL7A1Q02388 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC12.61□□□□□ -0.39
COL7A1Q02388 GPS2P2-201ENST00000430745 888 ntBASIC12.61□□□□□ -0.39
COL7A1Q02388 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC12.61□□□□□ -0.39
COL7A1Q02388 RN7SL692P-201ENST00000464677 288 ntBASIC12.61□□□□□ -0.39
COL7A1Q02388 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC12.61□□□□□ -0.39
COL7A1Q02388 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC12.61□□□□□ -0.39
COL7A1Q02388 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC12.61□□□□□ -0.39
COL7A1Q02388 LINC02560-201ENST00000596379 459 ntBASIC12.61□□□□□ -0.39
COL7A1Q02388 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC12.61□□□□□ -0.39
COL7A1Q02388 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL7A1Q02388 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
COL7A1Q02388 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL7A1Q02388 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC12.61□□□□□ -0.39
COL7A1Q02388 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL7A1Q02388 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC12.61□□□□□ -0.39
COL7A1Q02388 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC12.61□□□□□ -0.39
COL7A1Q02388 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC12.61□□□□□ -0.39
COL7A1Q02388 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL7A1Q02388 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
COL7A1Q02388 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC12.61□□□□□ -0.39
COL7A1Q02388 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL7A1Q02388 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC12.61□□□□□ -0.39
COL7A1Q02388 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC12.61□□□□□ -0.39
COL7A1Q02388 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC12.61□□□□□ -0.39
COL7A1Q02388 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
COL7A1Q02388 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC12.61□□□□□ -0.39
COL7A1Q02388 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL7A1Q02388 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL7A1Q02388 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL7A1Q02388 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
COL7A1Q02388 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL7A1Q02388 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
COL7A1Q02388 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC12.61□□□□□ -0.39
COL7A1Q02388 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
COL7A1Q02388 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
COL7A1Q02388 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC12.61□□□□□ -0.39
COL7A1Q02388 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
COL7A1Q02388 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL7A1Q02388 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
COL7A1Q02388 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL7A1Q02388 SPDYE11-202ENST00000450699 704 ntBASIC12.61□□□□□ -0.39
COL7A1Q02388 AC067863.1-201ENST00000494933 530 ntBASIC12.61□□□□□ -0.39
COL7A1Q02388 S100A2-206ENST00000497140 697 ntTSL 2 BASIC12.61□□□□□ -0.39
COL7A1Q02388 COQ6-210ENST00000554920 649 ntTSL 3 BASIC12.61□□□□□ -0.39
COL7A1Q02388 SPDYE9P-201ENST00000570642 692 ntBASIC12.61□□□□□ -0.39
COL7A1Q02388 SPDYE10P-202ENST00000612005 668 ntBASIC12.61□□□□□ -0.39
COL7A1Q02388 SPDYE8P-202ENST00000612377 668 ntBASIC12.61□□□□□ -0.39
COL7A1Q02388 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
COL7A1Q02388 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
COL7A1Q02388 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC12.6□□□□□ -0.39
COL7A1Q02388 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL7A1Q02388 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL7A1Q02388 AC003669.1-201ENST00000334569 611 ntBASIC12.6□□□□□ -0.39
COL7A1Q02388 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
COL7A1Q02388 GATB-205ENST00000508611 605 ntTSL 2 BASIC12.6□□□□□ -0.39
COL7A1Q02388 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC12.6□□□□□ -0.39
COL7A1Q02388 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC12.6□□□□□ -0.39
COL7A1Q02388 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC12.6□□□□□ -0.39
COL7A1Q02388 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL7A1Q02388 IGHV3-72-202ENST00000621503 303 ntBASIC12.6□□□□□ -0.39
COL7A1Q02388 REXO1L3P-201ENST00000622202 1288 ntBASIC12.6□□□□□ -0.39
COL7A1Q02388 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC12.6□□□□□ -0.39
COL7A1Q02388 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC12.6□□□□□ -0.39
COL7A1Q02388 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL7A1Q02388 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
COL7A1Q02388 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL7A1Q02388 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL7A1Q02388 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC12.6□□□□□ -0.39
COL7A1Q02388 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC12.6□□□□□ -0.39
COL7A1Q02388 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
COL7A1Q02388 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
COL7A1Q02388 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL7A1Q02388 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL7A1Q02388 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
COL7A1Q02388 RAC2-204ENST00000406508 893 ntTSL 5 BASIC12.6□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms