Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC12.61□□□□□ -0.39
RPL39P62891 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
RPL39P62891 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC12.61□□□□□ -0.39
RPL39P62891 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC12.61□□□□□ -0.39
RPL39P62891 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RPL39P62891 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RPL39P62891 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
RPL39P62891 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RPL39P62891 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
RPL39P62891 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
RPL39P62891 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
RPL39P62891 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
RPL39P62891 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
RPL39P62891 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RPL39P62891 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
RPL39P62891 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC12.6□□□□□ -0.39
RPL39P62891 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC12.6□□□□□ -0.39
RPL39P62891 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC12.6□□□□□ -0.39
RPL39P62891 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC12.6□□□□□ -0.39
RPL39P62891 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RPL39P62891 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
RPL39P62891 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC12.6□□□□□ -0.39
RPL39P62891 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RPL39P62891 AC079328.2-201ENST00000561241 3354 ntBASIC12.6□□□□□ -0.39
RPL39P62891 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RPL39P62891 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC12.6□□□□□ -0.39
RPL39P62891 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RPL39P62891 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RPL39P62891 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
RPL39P62891 AL024508.2-201ENST00000607749 1894 ntBASIC12.6□□□□□ -0.39
RPL39P62891 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RPL39P62891 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
RPL39P62891 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RPL39P62891 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RPL39P62891 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RPL39P62891 KIRREL3-AS3-201ENST00000404882 831 ntBASIC12.6□□□□□ -0.39
RPL39P62891 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RPL39P62891 AGGF1P2-201ENST00000426656 2106 ntBASIC12.6□□□□□ -0.39
RPL39P62891 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC12.6□□□□□ -0.39
RPL39P62891 AC133681.1-201ENST00000465482 601 ntBASIC12.6□□□□□ -0.39
RPL39P62891 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
RPL39P62891 B3GAT3P1-201ENST00000471720 806 ntBASIC12.6□□□□□ -0.39
RPL39P62891 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RPL39P62891 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC12.6□□□□□ -0.39
RPL39P62891 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RPL39P62891 AC142086.2-201ENST00000569753 217 ntBASIC12.6□□□□□ -0.39
RPL39P62891 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RPL39P62891 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
RPL39P62891 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RPL39P62891 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
RPL39P62891 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
RPL39P62891 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RPL39P62891 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RPL39P62891 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC12.6□□□□□ -0.39
RPL39P62891 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
RPL39P62891 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RPL39P62891 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RPL39P62891 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC12.6□□□□□ -0.39
RPL39P62891 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC12.6□□□□□ -0.39
RPL39P62891 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC12.6□□□□□ -0.39
RPL39P62891 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC12.6□□□□□ -0.39
RPL39P62891 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC12.6□□□□□ -0.39
RPL39P62891 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
RPL39P62891 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
RPL39P62891 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
RPL39P62891 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC12.59□□□□□ -0.39
RPL39P62891 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RPL39P62891 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RPL39P62891 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
RPL39P62891 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
RPL39P62891 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
RPL39P62891 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC12.59□□□□□ -0.39
RPL39P62891 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RPL39P62891 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
RPL39P62891 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
RPL39P62891 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
RPL39P62891 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC12.59□□□□□ -0.39
RPL39P62891 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RPL39P62891 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RPL39P62891 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RPL39P62891 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
RPL39P62891 TPR-209ENST00000613151 2478 ntTSL 5 BASIC12.59□□□□□ -0.39
RPL39P62891 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC12.59□□□□□ -0.39
RPL39P62891 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC12.59□□□□□ -0.39
RPL39P62891 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RPL39P62891 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
RPL39P62891 RNA5SP413-201ENST00000516373 109 ntBASIC12.59□□□□□ -0.39
RPL39P62891 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC12.59□□□□□ -0.39
RPL39P62891 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC12.59□□□□□ -0.39
RPL39P62891 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC12.59□□□□□ -0.39
RPL39P62891 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC12.59□□□□□ -0.39
RPL39P62891 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RPL39P62891 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
RPL39P62891 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
RPL39P62891 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
RPL39P62891 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC12.59□□□□□ -0.39
RPL39P62891 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RPL39P62891 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC12.59□□□□□ -0.39
RPL39P62891 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RPL39P62891 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC12.59□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms