Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SOX2P48431 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SOX2P48431 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
SOX2P48431 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC15.69■□□□□ 0.1
SOX2P48431 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SOX2P48431 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
SOX2P48431 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX2P48431 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX2P48431 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX2P48431 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
SOX2P48431 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX2P48431 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC15.68■□□□□ 0.1
SOX2P48431 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
SOX2P48431 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX2P48431 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX2P48431 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX2P48431 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX2P48431 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX2P48431 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX2P48431 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC15.68■□□□□ 0.1
SOX2P48431 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX2P48431 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC15.68■□□□□ 0.1
SOX2P48431 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
SOX2P48431 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX2P48431 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SOX2P48431 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX2P48431 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC15.68■□□□□ 0.1
SOX2P48431 ILF2-202ENST00000368681 726 ntTSL 2 BASIC15.68■□□□□ 0.1
SOX2P48431 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
SOX2P48431 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
SOX2P48431 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX2P48431 TSPY17P-201ENST00000450329 467 ntBASIC15.68■□□□□ 0.1
SOX2P48431 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SOX2P48431 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX2P48431 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC15.68■□□□□ 0.1
SOX2P48431 AC142381.4-202ENST00000563973 229 ntBASIC15.68■□□□□ 0.1
SOX2P48431 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC15.68■□□□□ 0.1
SOX2P48431 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC15.68■□□□□ 0.1
SOX2P48431 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC15.68■□□□□ 0.1
SOX2P48431 AP005242.2-201ENST00000580065 1175 ntBASIC15.68■□□□□ 0.1
SOX2P48431 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC15.68■□□□□ 0.1
SOX2P48431 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC15.68■□□□□ 0.1
SOX2P48431 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.68■□□□□ 0.1
SOX2P48431 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX2P48431 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
SOX2P48431 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX2P48431 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX2P48431 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
SOX2P48431 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC15.68■□□□□ 0.1
SOX2P48431 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX2P48431 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX2P48431 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
SOX2P48431 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SOX2P48431 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SOX2P48431 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX2P48431 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SOX2P48431 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC15.67■□□□□ 0.1
SOX2P48431 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX2P48431 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX2P48431 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC15.67■□□□□ 0.1
SOX2P48431 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX2P48431 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SOX2P48431 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC15.67■□□□□ 0.1
SOX2P48431 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SOX2P48431 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
SOX2P48431 PRR31-201ENST00000371629 978 ntTSL 2 BASIC15.67■□□□□ 0.1
SOX2P48431 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC15.67■□□□□ 0.1
SOX2P48431 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SOX2P48431 SLC25A1P2-201ENST00000430693 912 ntBASIC15.67■□□□□ 0.1
SOX2P48431 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC15.67■□□□□ 0.1
SOX2P48431 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX2P48431 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC15.67■□□□□ 0.1
SOX2P48431 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX2P48431 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX2P48431 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC15.67■□□□□ 0.1
SOX2P48431 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SOX2P48431 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC15.67■□□□□ 0.1
SOX2P48431 AC010240.3-201ENST00000607688 395 ntBASIC15.67■□□□□ 0.1
SOX2P48431 AP001412.1-201ENST00000608405 714 ntBASIC15.67■□□□□ 0.1
SOX2P48431 AC026471.5-201ENST00000615068 467 ntBASIC15.67■□□□□ 0.1
SOX2P48431 ITM2C-210ENST00000620962 501 ntBASIC15.67■□□□□ 0.1
SOX2P48431 AL049637.2-201ENST00000641778 930 ntBASIC15.67■□□□□ 0.1
SOX2P48431 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX2P48431 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX2P48431 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX2P48431 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC15.67■□□□□ 0.1
SOX2P48431 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC15.67■□□□□ 0.1
SOX2P48431 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SOX2P48431 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SOX2P48431 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX2P48431 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
SOX2P48431 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX2P48431 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC15.67■□□□□ 0.1
SOX2P48431 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SOX2P48431 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
SOX2P48431 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
SOX2P48431 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX2P48431 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SOX2P48431 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC15.66■□□□□ 0.1
SOX2P48431 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms