Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC29.52■■■□□ 2.32
CUX1P39880 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC29.52■■■□□ 2.32
CUX1P39880 KLK8-202ENST00000320838 456 ntTSL 5 BASIC29.52■■■□□ 2.32
CUX1P39880 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
CUX1P39880 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC29.52■■■□□ 2.32
CUX1P39880 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
CUX1P39880 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
CUX1P39880 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC29.52■■■□□ 2.32
CUX1P39880 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
CUX1P39880 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC29.52■■■□□ 2.32
CUX1P39880 AC007064.4-201ENST00000637740 555 ntBASIC29.52■■■□□ 2.32
CUX1P39880 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC29.52■■■□□ 2.32
CUX1P39880 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
CUX1P39880 AL121761.2-201ENST00000598007 1648 ntBASIC29.52■■■□□ 2.32
CUX1P39880 AC093677.2-201ENST00000600169 1863 ntBASIC29.52■■■□□ 2.32
CUX1P39880 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC29.52■■■□□ 2.32
CUX1P39880 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC29.51■■■□□ 2.32
CUX1P39880 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC29.51■■■□□ 2.32
CUX1P39880 SLBP-205ENST00000488267 987 ntTSL 2 BASIC29.51■■■□□ 2.32
CUX1P39880 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC29.51■■■□□ 2.32
CUX1P39880 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC29.51■■■□□ 2.32
CUX1P39880 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC29.51■■■□□ 2.32
CUX1P39880 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC29.51■■■□□ 2.32
CUX1P39880 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
CUX1P39880 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
CUX1P39880 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
CUX1P39880 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC29.51■■■□□ 2.31
CUX1P39880 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
CUX1P39880 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
CUX1P39880 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
CUX1P39880 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC29.51■■■□□ 2.31
CUX1P39880 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC29.5■■■□□ 2.31
CUX1P39880 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
CUX1P39880 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
CUX1P39880 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC29.5■■■□□ 2.31
CUX1P39880 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC29.5■■■□□ 2.31
CUX1P39880 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC29.5■■■□□ 2.31
CUX1P39880 AC015911.4-201ENST00000588022 1070 ntBASIC29.5■■■□□ 2.31
CUX1P39880 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC29.5■■■□□ 2.31
CUX1P39880 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
CUX1P39880 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
CUX1P39880 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC29.5■■■□□ 2.31
CUX1P39880 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC29.5■■■□□ 2.31
CUX1P39880 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC29.5■■■□□ 2.31
CUX1P39880 AL627223.1-201ENST00000416693 442 ntBASIC29.5■■■□□ 2.31
CUX1P39880 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC29.5■■■□□ 2.31
CUX1P39880 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
CUX1P39880 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC29.5■■■□□ 2.31
CUX1P39880 REXO1L3P-201ENST00000622202 1288 ntBASIC29.5■■■□□ 2.31
CUX1P39880 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
CUX1P39880 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
CUX1P39880 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
CUX1P39880 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC29.49■■■□□ 2.31
CUX1P39880 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
CUX1P39880 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC29.49■■■□□ 2.31
CUX1P39880 GREM1-201ENST00000560677 623 ntTSL 4 BASIC29.49■■■□□ 2.31
CUX1P39880 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC29.49■■■□□ 2.31
CUX1P39880 PRR29-209ENST00000582540 967 ntTSL 2 BASIC29.49■■■□□ 2.31
CUX1P39880 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC29.49■■■□□ 2.31
CUX1P39880 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
CUX1P39880 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
CUX1P39880 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC29.48■■■□□ 2.31
CUX1P39880 POR-209ENST00000439269 1858 ntTSL 2 BASIC29.48■■■□□ 2.31
CUX1P39880 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC29.48■■■□□ 2.31
CUX1P39880 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
CUX1P39880 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC29.48■■■□□ 2.31
CUX1P39880 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC29.48■■■□□ 2.31
CUX1P39880 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC29.48■■■□□ 2.31
CUX1P39880 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC29.48■■■□□ 2.31
CUX1P39880 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC29.48■■■□□ 2.31
CUX1P39880 FALEC-201ENST00000416894 566 ntTSL 3 BASIC29.48■■■□□ 2.31
CUX1P39880 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
CUX1P39880 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC29.48■■■□□ 2.31
CUX1P39880 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC29.48■■■□□ 2.31
CUX1P39880 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
CUX1P39880 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
CUX1P39880 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC29.48■■■□□ 2.31
CUX1P39880 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
CUX1P39880 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC29.48■■■□□ 2.31
CUX1P39880 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
CUX1P39880 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
CUX1P39880 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
CUX1P39880 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
CUX1P39880 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC29.47■■■□□ 2.31
CUX1P39880 PTMS-202ENST00000389462 773 ntTSL 2 BASIC29.47■■■□□ 2.31
CUX1P39880 AL355306.1-201ENST00000415580 579 ntBASIC29.47■■■□□ 2.31
CUX1P39880 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC29.47■■■□□ 2.31
CUX1P39880 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC29.47■■■□□ 2.31
CUX1P39880 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC29.47■■■□□ 2.31
CUX1P39880 SLC25A6P2-201ENST00000497974 877 ntBASIC29.47■■■□□ 2.31
CUX1P39880 AC239800.4-201ENST00000603712 296 ntBASIC29.47■■■□□ 2.31
CUX1P39880 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
CUX1P39880 REM2-202ENST00000536884 1331 ntTSL 2 BASIC29.47■■■□□ 2.31
CUX1P39880 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
CUX1P39880 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
CUX1P39880 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
CUX1P39880 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
CUX1P39880 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC29.47■■■□□ 2.31
CUX1P39880 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC29.47■■■□□ 2.31
CUX1P39880 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC29.47■■■□□ 2.31
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms