Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC21.17■□□□□ 0.98
COL4A5P29400 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A5P29400 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A5P29400 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL4A5P29400 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC21.17■□□□□ 0.98
COL4A5P29400 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC21.17■□□□□ 0.98
COL4A5P29400 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A5P29400 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A5P29400 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A5P29400 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A5P29400 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
COL4A5P29400 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A5P29400 AC244107.1-201ENST00000442033 332 ntBASIC21.16■□□□□ 0.98
COL4A5P29400 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC21.16■□□□□ 0.98
COL4A5P29400 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A5P29400 NMU-203ENST00000507338 658 ntTSL 3 BASIC21.16■□□□□ 0.98
COL4A5P29400 KRT8P48-201ENST00000515599 1220 ntBASIC21.16■□□□□ 0.98
COL4A5P29400 AQP6-203ENST00000551733 849 ntTSL 3 BASIC21.16■□□□□ 0.98
COL4A5P29400 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A5P29400 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A5P29400 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A5P29400 CYP51A1P2-201ENST00000419457 1499 ntBASIC21.16■□□□□ 0.98
COL4A5P29400 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A5P29400 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A5P29400 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A5P29400 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A5P29400 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A5P29400 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
COL4A5P29400 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL4A5P29400 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
COL4A5P29400 AC073130.3-201ENST00000624389 2278 ntBASIC21.16■□□□□ 0.98
COL4A5P29400 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A5P29400 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A5P29400 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A5P29400 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC21.15■□□□□ 0.98
COL4A5P29400 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A5P29400 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A5P29400 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
COL4A5P29400 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
COL4A5P29400 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
COL4A5P29400 FAM86GP-201ENST00000448322 971 ntBASIC21.15■□□□□ 0.98
COL4A5P29400 DUT-210ENST00000559935 569 ntTSL 3 BASIC21.15■□□□□ 0.98
COL4A5P29400 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A5P29400 AF228730.6-201ENST00000641497 218 ntBASIC21.15■□□□□ 0.98
COL4A5P29400 AC084121.3-201ENST00000641716 218 ntBASIC21.15■□□□□ 0.98
COL4A5P29400 AC105233.6-201ENST00000642093 218 ntBASIC21.15■□□□□ 0.98
COL4A5P29400 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
COL4A5P29400 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A5P29400 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A5P29400 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC21.15■□□□□ 0.98
COL4A5P29400 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A5P29400 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A5P29400 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A5P29400 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC21.15■□□□□ 0.98
COL4A5P29400 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC21.15■□□□□ 0.98
COL4A5P29400 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A5P29400 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
COL4A5P29400 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A5P29400 AL355306.1-201ENST00000415580 579 ntBASIC21.15■□□□□ 0.98
COL4A5P29400 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC21.15■□□□□ 0.98
COL4A5P29400 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL4A5P29400 TAF8-206ENST00000472818 719 ntTSL 2 BASIC21.15■□□□□ 0.98
COL4A5P29400 AC093214.1-201ENST00000511688 1107 ntBASIC21.15■□□□□ 0.98
COL4A5P29400 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC21.15■□□□□ 0.98
COL4A5P29400 AL096828.2-201ENST00000567259 1965 ntBASIC21.15■□□□□ 0.98
COL4A5P29400 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL4A5P29400 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
COL4A5P29400 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
COL4A5P29400 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL4A5P29400 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
COL4A5P29400 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
COL4A5P29400 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC21.14■□□□□ 0.97
COL4A5P29400 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A5P29400 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A5P29400 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A5P29400 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC21.14■□□□□ 0.97
COL4A5P29400 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC21.14■□□□□ 0.97
COL4A5P29400 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A5P29400 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A5P29400 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A5P29400 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
COL4A5P29400 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC21.14■□□□□ 0.97
COL4A5P29400 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC21.14■□□□□ 0.97
COL4A5P29400 UGT1A2P-201ENST00000454886 866 ntBASIC21.14■□□□□ 0.97
COL4A5P29400 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A5P29400 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC21.14■□□□□ 0.97
COL4A5P29400 AL035252.4-201ENST00000624174 288 ntBASIC21.14■□□□□ 0.97
COL4A5P29400 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A5P29400 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.14■□□□□ 0.97
COL4A5P29400 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC21.14■□□□□ 0.97
COL4A5P29400 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A5P29400 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A5P29400 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A5P29400 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A5P29400 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL4A5P29400 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A5P29400 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A5P29400 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC21.13■□□□□ 0.97
COL4A5P29400 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL4A5P29400 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms