Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL9A1P20849 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL9A1P20849 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
COL9A1P20849 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL9A1P20849 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL9A1P20849 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL9A1P20849 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
COL9A1P20849 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL9A1P20849 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL9A1P20849 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL9A1P20849 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
COL9A1P20849 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL9A1P20849 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL9A1P20849 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC18.2■□□□□ 0.5
COL9A1P20849 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC18.2■□□□□ 0.5
COL9A1P20849 VPS29-207ENST00000549970 818 ntTSL 3 BASIC18.2■□□□□ 0.5
COL9A1P20849 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC18.2■□□□□ 0.5
COL9A1P20849 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC18.2■□□□□ 0.5
COL9A1P20849 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC18.2■□□□□ 0.5
COL9A1P20849 AC010336.2-201ENST00000564226 506 ntBASIC18.2■□□□□ 0.5
COL9A1P20849 TMEM261P1-201ENST00000604899 340 ntBASIC18.2■□□□□ 0.5
COL9A1P20849 CU639417.3-201ENST00000624240 1404 ntBASIC18.2■□□□□ 0.5
COL9A1P20849 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL9A1P20849 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL9A1P20849 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL9A1P20849 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL9A1P20849 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL9A1P20849 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
COL9A1P20849 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL9A1P20849 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
COL9A1P20849 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL9A1P20849 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.19■□□□□ 0.5
COL9A1P20849 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.19■□□□□ 0.5
COL9A1P20849 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL9A1P20849 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL9A1P20849 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL9A1P20849 NEK7-201ENST00000367383 586 ntTSL 2 BASIC18.19■□□□□ 0.5
COL9A1P20849 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL9A1P20849 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC18.19■□□□□ 0.5
COL9A1P20849 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
COL9A1P20849 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC18.19■□□□□ 0.5
COL9A1P20849 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.19■□□□□ 0.5
COL9A1P20849 CNN2P2-201ENST00000443536 909 ntBASIC18.19■□□□□ 0.5
COL9A1P20849 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC18.19■□□□□ 0.5
COL9A1P20849 CNN2P3-201ENST00000450201 906 ntBASIC18.19■□□□□ 0.5
COL9A1P20849 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL9A1P20849 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.19■□□□□ 0.5
COL9A1P20849 SMN2-210ENST00000511812 867 ntTSL 2 BASIC18.19■□□□□ 0.5
COL9A1P20849 AL136317.3-201ENST00000618497 906 ntBASIC18.19■□□□□ 0.5
COL9A1P20849 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL9A1P20849 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
COL9A1P20849 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.19■□□□□ 0.5
COL9A1P20849 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL9A1P20849 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL9A1P20849 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL9A1P20849 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL9A1P20849 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL9A1P20849 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL9A1P20849 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL9A1P20849 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC18.18■□□□□ 0.5
COL9A1P20849 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL9A1P20849 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.18■□□□□ 0.5
COL9A1P20849 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.18■□□□□ 0.5
COL9A1P20849 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
COL9A1P20849 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
COL9A1P20849 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
COL9A1P20849 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
COL9A1P20849 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.18■□□□□ 0.5
COL9A1P20849 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC18.18■□□□□ 0.5
COL9A1P20849 VMA21-202ENST00000370361 693 ntTSL 5 BASIC18.18■□□□□ 0.5
COL9A1P20849 MIR1909-201ENST00000411312 80 ntBASIC18.18■□□□□ 0.5
COL9A1P20849 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC18.18■□□□□ 0.5
COL9A1P20849 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.18■□□□□ 0.5
COL9A1P20849 SLC25A39P2-201ENST00000537614 270 ntBASIC18.18■□□□□ 0.5
COL9A1P20849 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL9A1P20849 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC18.18■□□□□ 0.5
COL9A1P20849 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC18.18■□□□□ 0.5
COL9A1P20849 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL9A1P20849 NAA38-206ENST00000576384 424 ntTSL 2 BASIC18.18■□□□□ 0.5
COL9A1P20849 SDCCAG3P1-201ENST00000589292 1150 ntBASIC18.18■□□□□ 0.5
COL9A1P20849 AC022145.2-201ENST00000598203 171 ntBASIC18.18■□□□□ 0.5
COL9A1P20849 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
COL9A1P20849 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.18■□□□□ 0.5
COL9A1P20849 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL9A1P20849 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
COL9A1P20849 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.18■□□□□ 0.5
COL9A1P20849 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.18■□□□□ 0.5
COL9A1P20849 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL9A1P20849 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL9A1P20849 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL9A1P20849 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL9A1P20849 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.18■□□□□ 0.5
COL9A1P20849 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL9A1P20849 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC18.18■□□□□ 0.5
COL9A1P20849 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL9A1P20849 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC18.17■□□□□ 0.5
COL9A1P20849 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.17■□□□□ 0.5
COL9A1P20849 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL9A1P20849 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL9A1P20849 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms