Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSH3P20585 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSH3P20585 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.73■□□□□ 0.43
MSH3P20585 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSH3P20585 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
MSH3P20585 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH3P20585 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
MSH3P20585 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.72■□□□□ 0.43
MSH3P20585 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
MSH3P20585 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH3P20585 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
MSH3P20585 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
MSH3P20585 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH3P20585 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
MSH3P20585 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH3P20585 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH3P20585 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
MSH3P20585 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH3P20585 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.72■□□□□ 0.43
MSH3P20585 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
MSH3P20585 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH3P20585 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH3P20585 DRAXINP1-201ENST00000437611 948 ntBASIC17.72■□□□□ 0.43
MSH3P20585 LINC00265-3P-201ENST00000447588 903 ntBASIC17.72■□□□□ 0.43
MSH3P20585 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC17.72■□□□□ 0.43
MSH3P20585 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
MSH3P20585 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC17.72■□□□□ 0.43
MSH3P20585 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH3P20585 NPAP1P7-201ENST00000613027 823 ntBASIC17.72■□□□□ 0.43
MSH3P20585 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
MSH3P20585 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH3P20585 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
MSH3P20585 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH3P20585 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH3P20585 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH3P20585 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
MSH3P20585 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH3P20585 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH3P20585 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
MSH3P20585 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH3P20585 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH3P20585 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
MSH3P20585 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
MSH3P20585 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH3P20585 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
MSH3P20585 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH3P20585 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH3P20585 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
MSH3P20585 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
MSH3P20585 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH3P20585 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
MSH3P20585 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.71■□□□□ 0.43
MSH3P20585 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
MSH3P20585 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
MSH3P20585 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.71■□□□□ 0.43
MSH3P20585 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
MSH3P20585 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH3P20585 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH3P20585 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH3P20585 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH3P20585 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.71■□□□□ 0.43
MSH3P20585 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.71■□□□□ 0.43
MSH3P20585 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH3P20585 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH3P20585 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH3P20585 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.71■□□□□ 0.43
MSH3P20585 TOB2P1-201ENST00000469761 992 ntBASIC17.71■□□□□ 0.43
MSH3P20585 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.71■□□□□ 0.43
MSH3P20585 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC17.71■□□□□ 0.43
MSH3P20585 CIB2-208ENST00000560618 804 ntTSL 2 BASIC17.71■□□□□ 0.43
MSH3P20585 TPSP2-201ENST00000561760 610 ntBASIC17.71■□□□□ 0.43
MSH3P20585 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.71■□□□□ 0.43
MSH3P20585 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC17.71■□□□□ 0.43
MSH3P20585 AC116407.2-201ENST00000613639 860 ntBASIC17.71■□□□□ 0.43
MSH3P20585 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
MSH3P20585 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH3P20585 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.71■□□□□ 0.43
MSH3P20585 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH3P20585 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.71■□□□□ 0.43
MSH3P20585 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH3P20585 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
MSH3P20585 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH3P20585 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH3P20585 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
MSH3P20585 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH3P20585 AC067852.2-201ENST00000590513 2313 ntBASIC17.71■□□□□ 0.43
MSH3P20585 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH3P20585 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
MSH3P20585 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH3P20585 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
MSH3P20585 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
MSH3P20585 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.42
MSH3P20585 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.71■□□□□ 0.42
MSH3P20585 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.71■□□□□ 0.42
MSH3P20585 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
MSH3P20585 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
MSH3P20585 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
MSH3P20585 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
MSH3P20585 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
MSH3P20585 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms