Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NKX2-2O95096 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
NKX2-2O95096 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.41■□□□□ 0.22
NKX2-2O95096 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
NKX2-2O95096 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NKX2-2O95096 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NKX2-2O95096 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
NKX2-2O95096 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
NKX2-2O95096 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NKX2-2O95096 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
NKX2-2O95096 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
NKX2-2O95096 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.41■□□□□ 0.22
NKX2-2O95096 AC007967.3-201ENST00000434308 558 ntBASIC16.41■□□□□ 0.22
NKX2-2O95096 DRAXINP1-201ENST00000437611 948 ntBASIC16.41■□□□□ 0.22
NKX2-2O95096 VENTXP7-201ENST00000475503 772 ntBASIC16.41■□□□□ 0.22
NKX2-2O95096 AC091076.1-201ENST00000610741 619 ntBASIC16.41■□□□□ 0.22
NKX2-2O95096 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.41■□□□□ 0.22
NKX2-2O95096 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.41■□□□□ 0.22
NKX2-2O95096 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.41■□□□□ 0.22
NKX2-2O95096 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NKX2-2O95096 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
NKX2-2O95096 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NKX2-2O95096 AL138688.1-201ENST00000624851 1594 ntBASIC16.41■□□□□ 0.22
NKX2-2O95096 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
NKX2-2O95096 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
NKX2-2O95096 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC16.41■□□□□ 0.22
NKX2-2O95096 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
NKX2-2O95096 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
NKX2-2O95096 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
NKX2-2O95096 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.4■□□□□ 0.22
NKX2-2O95096 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.4■□□□□ 0.22
NKX2-2O95096 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NKX2-2O95096 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
NKX2-2O95096 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
NKX2-2O95096 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
NKX2-2O95096 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
NKX2-2O95096 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NKX2-2O95096 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.4■□□□□ 0.22
NKX2-2O95096 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NKX2-2O95096 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.4■□□□□ 0.22
NKX2-2O95096 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NKX2-2O95096 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.4■□□□□ 0.22
NKX2-2O95096 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.4■□□□□ 0.22
NKX2-2O95096 RNF146-204ENST00000476956 884 ntTSL 2 BASIC16.4■□□□□ 0.22
NKX2-2O95096 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.4■□□□□ 0.22
NKX2-2O95096 TPSP2-201ENST00000561760 610 ntBASIC16.4■□□□□ 0.22
NKX2-2O95096 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.4■□□□□ 0.22
NKX2-2O95096 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
NKX2-2O95096 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
NKX2-2O95096 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NKX2-2O95096 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NKX2-2O95096 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.4■□□□□ 0.22
NKX2-2O95096 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
NKX2-2O95096 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
NKX2-2O95096 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.4■□□□□ 0.22
NKX2-2O95096 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NKX2-2O95096 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
NKX2-2O95096 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
NKX2-2O95096 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
NKX2-2O95096 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.4■□□□□ 0.22
NKX2-2O95096 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NKX2-2O95096 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
NKX2-2O95096 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.4■□□□□ 0.22
NKX2-2O95096 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.39■□□□□ 0.21
NKX2-2O95096 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.39■□□□□ 0.21
NKX2-2O95096 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC16.39■□□□□ 0.21
NKX2-2O95096 HARS-201ENST00000307633 1780 ntTSL 2 BASIC16.39■□□□□ 0.21
NKX2-2O95096 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NKX2-2O95096 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
NKX2-2O95096 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
NKX2-2O95096 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
NKX2-2O95096 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
NKX2-2O95096 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
NKX2-2O95096 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC16.39■□□□□ 0.21
NKX2-2O95096 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.39■□□□□ 0.21
NKX2-2O95096 AC091607.1-201ENST00000490318 1060 ntBASIC16.39■□□□□ 0.21
NKX2-2O95096 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.39■□□□□ 0.21
NKX2-2O95096 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.39■□□□□ 0.21
NKX2-2O95096 AP005901.3-202ENST00000581653 237 ntBASIC16.39■□□□□ 0.21
NKX2-2O95096 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.39■□□□□ 0.21
NKX2-2O95096 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.39■□□□□ 0.21
NKX2-2O95096 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
NKX2-2O95096 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.39■□□□□ 0.21
NKX2-2O95096 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.39■□□□□ 0.21
NKX2-2O95096 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC16.39■□□□□ 0.21
NKX2-2O95096 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.39■□□□□ 0.21
NKX2-2O95096 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
NKX2-2O95096 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.39■□□□□ 0.21
NKX2-2O95096 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
NKX2-2O95096 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
NKX2-2O95096 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC16.39■□□□□ 0.21
NKX2-2O95096 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.39■□□□□ 0.21
NKX2-2O95096 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
NKX2-2O95096 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.39■□□□□ 0.21
NKX2-2O95096 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC16.39■□□□□ 0.21
NKX2-2O95096 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NKX2-2O95096 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NKX2-2O95096 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
NKX2-2O95096 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NKX2-2O95096 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms