Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
NPHP4O75161 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC24.8■■□□□ 1.56
NPHP4O75161 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC24.8■■□□□ 1.56
NPHP4O75161 CYP51A1P2-201ENST00000419457 1499 ntBASIC24.8■■□□□ 1.56
NPHP4O75161 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
NPHP4O75161 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC24.8■■□□□ 1.56
NPHP4O75161 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC24.8■■□□□ 1.56
NPHP4O75161 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC24.8■■□□□ 1.56
NPHP4O75161 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
NPHP4O75161 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC24.8■■□□□ 1.56
NPHP4O75161 AL596325.1-201ENST00000563991 1082 ntBASIC24.8■■□□□ 1.56
NPHP4O75161 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC24.8■■□□□ 1.56
NPHP4O75161 ESPNP-201ENST00000270691 2015 ntBASIC24.8■■□□□ 1.56
NPHP4O75161 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC24.8■■□□□ 1.56
NPHP4O75161 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
NPHP4O75161 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
NPHP4O75161 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC24.8■■□□□ 1.56
NPHP4O75161 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
NPHP4O75161 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
NPHP4O75161 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC24.8■■□□□ 1.56
NPHP4O75161 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
NPHP4O75161 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
NPHP4O75161 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
NPHP4O75161 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
NPHP4O75161 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
NPHP4O75161 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC24.79■■□□□ 1.56
NPHP4O75161 NME2P1-201ENST00000426182 414 ntBASIC24.79■■□□□ 1.56
NPHP4O75161 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC24.79■■□□□ 1.56
NPHP4O75161 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC24.79■■□□□ 1.56
NPHP4O75161 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC24.79■■□□□ 1.56
NPHP4O75161 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC24.79■■□□□ 1.56
NPHP4O75161 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC24.79■■□□□ 1.56
NPHP4O75161 AL135744.1-201ENST00000565098 629 ntBASIC24.79■■□□□ 1.56
NPHP4O75161 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC24.79■■□□□ 1.56
NPHP4O75161 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC24.79■■□□□ 1.56
NPHP4O75161 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC24.79■■□□□ 1.56
NPHP4O75161 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC24.79■■□□□ 1.56
NPHP4O75161 AL590787.1-201ENST00000568856 1315 ntBASIC24.79■■□□□ 1.56
NPHP4O75161 RN7SL692P-201ENST00000464677 288 ntBASIC24.78■■□□□ 1.56
NPHP4O75161 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
NPHP4O75161 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC24.78■■□□□ 1.56
NPHP4O75161 SRP9-204ENST00000619790 377 ntTSL 2 BASIC24.78■■□□□ 1.56
NPHP4O75161 RAB34-224ENST00000636513 888 ntTSL 5 BASIC24.78■■□□□ 1.56
NPHP4O75161 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC24.78■■□□□ 1.56
NPHP4O75161 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
NPHP4O75161 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC24.78■■□□□ 1.56
NPHP4O75161 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC24.78■■□□□ 1.56
NPHP4O75161 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
NPHP4O75161 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC24.78■■□□□ 1.56
NPHP4O75161 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC24.78■■□□□ 1.56
NPHP4O75161 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC24.78■■□□□ 1.56
NPHP4O75161 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC24.78■■□□□ 1.56
NPHP4O75161 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
NPHP4O75161 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC24.78■■□□□ 1.56
NPHP4O75161 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC24.78■■□□□ 1.56
NPHP4O75161 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC24.78■■□□□ 1.56
NPHP4O75161 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
NPHP4O75161 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC24.78■■□□□ 1.56
NPHP4O75161 RBPMS2P1-201ENST00000437762 623 ntBASIC24.78■■□□□ 1.56
NPHP4O75161 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
NPHP4O75161 SPDYE14P-201ENST00000442619 822 ntBASIC24.78■■□□□ 1.56
NPHP4O75161 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC24.78■■□□□ 1.56
NPHP4O75161 SERBP1P5-201ENST00000510079 1181 ntBASIC24.78■■□□□ 1.56
NPHP4O75161 DUTP2-201ENST00000519164 463 ntBASIC24.78■■□□□ 1.56
NPHP4O75161 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC24.78■■□□□ 1.56
NPHP4O75161 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC24.78■■□□□ 1.56
NPHP4O75161 COQ9-214ENST00000567933 882 ntTSL 3 BASIC24.78■■□□□ 1.56
NPHP4O75161 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC24.78■■□□□ 1.56
NPHP4O75161 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC24.78■■□□□ 1.56
NPHP4O75161 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC24.78■■□□□ 1.56
NPHP4O75161 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
NPHP4O75161 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC24.77■■□□□ 1.56
NPHP4O75161 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
NPHP4O75161 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
NPHP4O75161 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
NPHP4O75161 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC24.77■■□□□ 1.56
NPHP4O75161 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC24.77■■□□□ 1.56
NPHP4O75161 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
NPHP4O75161 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
NPHP4O75161 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC24.77■■□□□ 1.56
NPHP4O75161 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC24.77■■□□□ 1.56
NPHP4O75161 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
NPHP4O75161 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
NPHP4O75161 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC24.77■■□□□ 1.56
NPHP4O75161 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC24.77■■□□□ 1.56
NPHP4O75161 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
NPHP4O75161 INO80E-210ENST00000567705 880 ntTSL 3 BASIC24.77■■□□□ 1.56
NPHP4O75161 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
NPHP4O75161 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC24.77■■□□□ 1.56
NPHP4O75161 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
NPHP4O75161 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
NPHP4O75161 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
NPHP4O75161 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
NPHP4O75161 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
NPHP4O75161 AC008677.1-201ENST00000519230 1561 ntBASIC24.76■■□□□ 1.55
NPHP4O75161 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC24.76■■□□□ 1.55
NPHP4O75161 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
NPHP4O75161 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC24.76■■□□□ 1.55
NPHP4O75161 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
NPHP4O75161 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC24.76■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms