Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
RNF40O75150 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF40O75150 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF40O75150 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RNF40O75150 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC19.24■□□□□ 0.67
RNF40O75150 HR-201ENST00000312841 5351 ntTSL 5 BASIC19.24■□□□□ 0.67
RNF40O75150 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
RNF40O75150 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC19.23■□□□□ 0.67
RNF40O75150 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF40O75150 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC19.23■□□□□ 0.67
RNF40O75150 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF40O75150 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
RNF40O75150 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
RNF40O75150 FLYWCH1P1-201ENST00000460917 1874 ntBASIC19.23■□□□□ 0.67
RNF40O75150 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC19.23■□□□□ 0.67
RNF40O75150 TSPY21P-201ENST00000433481 731 ntBASIC19.23■□□□□ 0.67
RNF40O75150 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.23■□□□□ 0.67
RNF40O75150 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
RNF40O75150 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC19.23■□□□□ 0.67
RNF40O75150 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF40O75150 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF40O75150 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19.23■□□□□ 0.67
RNF40O75150 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.23■□□□□ 0.67
RNF40O75150 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF40O75150 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
RNF40O75150 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RNF40O75150 AC008894.3-201ENST00000624324 3103 ntBASIC19.23■□□□□ 0.67
RNF40O75150 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF40O75150 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RNF40O75150 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RNF40O75150 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RNF40O75150 AL499627.1-201ENST00000569373 2188 ntBASIC19.22■□□□□ 0.67
RNF40O75150 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF40O75150 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF40O75150 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
RNF40O75150 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF40O75150 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC19.22■□□□□ 0.67
RNF40O75150 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC19.22■□□□□ 0.67
RNF40O75150 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
RNF40O75150 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
RNF40O75150 AC036111.1-201ENST00000533973 1582 ntBASIC19.22■□□□□ 0.67
RNF40O75150 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
RNF40O75150 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF40O75150 AC093677.2-201ENST00000600169 1863 ntBASIC19.22■□□□□ 0.67
RNF40O75150 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF40O75150 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF40O75150 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RNF40O75150 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RNF40O75150 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF40O75150 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF40O75150 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RNF40O75150 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RNF40O75150 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF40O75150 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RNF40O75150 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RNF40O75150 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RNF40O75150 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF40O75150 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RNF40O75150 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF40O75150 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF40O75150 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
RNF40O75150 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF40O75150 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC19.21■□□□□ 0.67
RNF40O75150 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF40O75150 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC19.21■□□□□ 0.67
RNF40O75150 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC19.21■□□□□ 0.67
RNF40O75150 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF40O75150 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF40O75150 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
RNF40O75150 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC19.21■□□□□ 0.67
RNF40O75150 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC19.21■□□□□ 0.67
RNF40O75150 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RNF40O75150 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RNF40O75150 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF40O75150 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
RNF40O75150 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF40O75150 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC19.21■□□□□ 0.67
RNF40O75150 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
RNF40O75150 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
RNF40O75150 AC046158.3-201ENST00000624947 2558 ntBASIC19.21■□□□□ 0.67
RNF40O75150 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF40O75150 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF40O75150 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC19.2■□□□□ 0.66
RNF40O75150 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RNF40O75150 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RNF40O75150 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
RNF40O75150 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RNF40O75150 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
RNF40O75150 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RNF40O75150 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RNF40O75150 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
RNF40O75150 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC19.2■□□□□ 0.66
RNF40O75150 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RNF40O75150 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RNF40O75150 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
RNF40O75150 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC19.2■□□□□ 0.66
RNF40O75150 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RNF40O75150 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RNF40O75150 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RNF40O75150 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms