Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1BO60663 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC15.67■□□□□ 0.1
LMX1BO60663 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1BO60663 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1BO60663 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
LMX1BO60663 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1BO60663 AC099398.1-201ENST00000567919 2776 ntBASIC15.66■□□□□ 0.1
LMX1BO60663 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1BO60663 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC15.66■□□□□ 0.1
LMX1BO60663 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1BO60663 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1BO60663 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1BO60663 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1BO60663 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1BO60663 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1BO60663 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1BO60663 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1BO60663 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1BO60663 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC15.66■□□□□ 0.1
LMX1BO60663 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
LMX1BO60663 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1BO60663 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1BO60663 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC15.66■□□□□ 0.1
LMX1BO60663 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1BO60663 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC15.66■□□□□ 0.1
LMX1BO60663 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
LMX1BO60663 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
LMX1BO60663 IRF5-214ENST00000613821 595 ntTSL 5 BASIC15.66■□□□□ 0.1
LMX1BO60663 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
LMX1BO60663 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1BO60663 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1BO60663 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
LMX1BO60663 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1BO60663 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1BO60663 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1BO60663 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC15.66■□□□□ 0.1
LMX1BO60663 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
LMX1BO60663 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1BO60663 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
LMX1BO60663 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1BO60663 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
LMX1BO60663 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1BO60663 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1BO60663 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC15.66■□□□□ 0.1
LMX1BO60663 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LMX1BO60663 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC15.65■□□□□ 0.1
LMX1BO60663 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LMX1BO60663 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LMX1BO60663 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
LMX1BO60663 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
LMX1BO60663 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
LMX1BO60663 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LMX1BO60663 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LMX1BO60663 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
LMX1BO60663 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC15.65■□□□□ 0.1
LMX1BO60663 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LMX1BO60663 KIRREL3-AS3-201ENST00000404882 831 ntBASIC15.65■□□□□ 0.1
LMX1BO60663 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LMX1BO60663 GRAMD4P1-201ENST00000435181 1110 ntBASIC15.65■□□□□ 0.1
LMX1BO60663 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC15.65■□□□□ 0.1
LMX1BO60663 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LMX1BO60663 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC15.65■□□□□ 0.1
LMX1BO60663 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC15.65■□□□□ 0.1
LMX1BO60663 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
LMX1BO60663 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LMX1BO60663 AC009053.2-201ENST00000563701 2365 ntBASIC15.65■□□□□ 0.1
LMX1BO60663 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LMX1BO60663 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
LMX1BO60663 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LMX1BO60663 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
LMX1BO60663 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
LMX1BO60663 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LMX1BO60663 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC15.65■□□□□ 0.1
LMX1BO60663 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
LMX1BO60663 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LMX1BO60663 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC15.65■□□□□ 0.1
LMX1BO60663 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
LMX1BO60663 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
LMX1BO60663 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC15.65■□□□□ 0.1
LMX1BO60663 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LMX1BO60663 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC15.64■□□□□ 0.1
LMX1BO60663 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.1
LMX1BO60663 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC15.64■□□□□ 0.1
LMX1BO60663 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1BO60663 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC15.64■□□□□ 0.09
LMX1BO60663 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1BO60663 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
LMX1BO60663 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1BO60663 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1BO60663 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1BO60663 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC15.64■□□□□ 0.09
LMX1BO60663 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC15.64■□□□□ 0.09
LMX1BO60663 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
LMX1BO60663 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1BO60663 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1BO60663 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1BO60663 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1BO60663 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1BO60663 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
LMX1BO60663 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms