Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SDCBPO00560 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC15.16■□□□□ 0.02
SDCBPO00560 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SDCBPO00560 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC15.16■□□□□ 0.02
SDCBPO00560 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC15.16■□□□□ 0.02
SDCBPO00560 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SDCBPO00560 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
SDCBPO00560 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SDCBPO00560 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
SDCBPO00560 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
SDCBPO00560 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SDCBPO00560 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC15.16■□□□□ 0.02
SDCBPO00560 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SDCBPO00560 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
SDCBPO00560 INGX-201ENST00000359239 846 ntBASIC15.16■□□□□ 0.02
SDCBPO00560 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
SDCBPO00560 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SDCBPO00560 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SDCBPO00560 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SDCBPO00560 AL596275.1-201ENST00000423464 877 ntBASIC15.16■□□□□ 0.02
SDCBPO00560 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SDCBPO00560 GRAMD4P1-201ENST00000435181 1110 ntBASIC15.16■□□□□ 0.02
SDCBPO00560 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SDCBPO00560 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SDCBPO00560 AC010947.1-201ENST00000623454 693 ntBASIC15.16■□□□□ 0.02
SDCBPO00560 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC15.16■□□□□ 0.02
SDCBPO00560 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SDCBPO00560 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC15.16■□□□□ 0.02
SDCBPO00560 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SDCBPO00560 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SDCBPO00560 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
SDCBPO00560 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC15.16■□□□□ 0.02
SDCBPO00560 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC15.16■□□□□ 0.02
SDCBPO00560 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SDCBPO00560 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SDCBPO00560 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
SDCBPO00560 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC15.16■□□□□ 0.02
SDCBPO00560 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SDCBPO00560 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC15.16■□□□□ 0.02
SDCBPO00560 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
SDCBPO00560 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SDCBPO00560 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SDCBPO00560 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
SDCBPO00560 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC15.16■□□□□ 0.02
SDCBPO00560 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
SDCBPO00560 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
SDCBPO00560 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SDCBPO00560 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SDCBPO00560 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC15.15■□□□□ 0.02
SDCBPO00560 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC15.15■□□□□ 0.02
SDCBPO00560 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SDCBPO00560 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
SDCBPO00560 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SDCBPO00560 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SDCBPO00560 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
SDCBPO00560 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SDCBPO00560 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SDCBPO00560 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC15.15■□□□□ 0.02
SDCBPO00560 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SDCBPO00560 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC15.15■□□□□ 0.02
SDCBPO00560 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC15.15■□□□□ 0.02
SDCBPO00560 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
SDCBPO00560 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC15.15■□□□□ 0.02
SDCBPO00560 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SDCBPO00560 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC15.15■□□□□ 0.02
SDCBPO00560 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC15.15■□□□□ 0.02
SDCBPO00560 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC15.15■□□□□ 0.02
SDCBPO00560 AL512604.3-201ENST00000569583 964 ntBASIC15.15■□□□□ 0.02
SDCBPO00560 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
SDCBPO00560 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SDCBPO00560 AC066615.1-201ENST00000640911 628 ntBASIC15.15■□□□□ 0.02
SDCBPO00560 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SDCBPO00560 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC15.15■□□□□ 0.02
SDCBPO00560 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SDCBPO00560 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SDCBPO00560 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SDCBPO00560 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC15.15■□□□□ 0.02
SDCBPO00560 BOC-212ENST00000485230 2173 ntTSL 2 BASIC15.15■□□□□ 0.02
SDCBPO00560 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
SDCBPO00560 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SDCBPO00560 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SDCBPO00560 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
SDCBPO00560 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
SDCBPO00560 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SDCBPO00560 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC15.14■□□□□ 0.01
SDCBPO00560 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC15.14■□□□□ 0.01
SDCBPO00560 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC15.14■□□□□ 0.01
SDCBPO00560 CROCCP2-202ENST00000412962 2773 ntBASIC15.14■□□□□ 0.01
SDCBPO00560 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
SDCBPO00560 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SDCBPO00560 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SDCBPO00560 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SDCBPO00560 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SDCBPO00560 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
SDCBPO00560 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
SDCBPO00560 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SDCBPO00560 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
SDCBPO00560 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
SDCBPO00560 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SDCBPO00560 CRAT-202ENST00000393384 973 ntTSL 2 BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms