Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC13.66□□□□□ -0.22
COL6A5A8TX70 AL158211.3-201ENST00000607385 239 ntBASIC13.66□□□□□ -0.22
COL6A5A8TX70 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
COL6A5A8TX70 AC007375.3-201ENST00000600936 2314 ntBASIC13.66□□□□□ -0.22
COL6A5A8TX70 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A5A8TX70 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC13.66□□□□□ -0.22
COL6A5A8TX70 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A5A8TX70 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
COL6A5A8TX70 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A5A8TX70 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC13.66□□□□□ -0.22
COL6A5A8TX70 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A5A8TX70 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A5A8TX70 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
COL6A5A8TX70 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
COL6A5A8TX70 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A5A8TX70 RN7SL589P-201ENST00000481268 310 ntBASIC13.66□□□□□ -0.22
COL6A5A8TX70 CXCL1P1-201ENST00000502804 216 ntBASIC13.66□□□□□ -0.22
COL6A5A8TX70 LY6E-204ENST00000519546 971 ntTSL 2 BASIC13.66□□□□□ -0.22
COL6A5A8TX70 CD74-212ENST00000524315 584 ntTSL 5 BASIC13.66□□□□□ -0.22
COL6A5A8TX70 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC13.66□□□□□ -0.22
COL6A5A8TX70 CDK4-206ENST00000549606 558 ntTSL 2 BASIC13.66□□□□□ -0.22
COL6A5A8TX70 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC13.66□□□□□ -0.22
COL6A5A8TX70 PFAS-212ENST00000625942 396 ntTSL 5 BASIC13.66□□□□□ -0.22
COL6A5A8TX70 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A5A8TX70 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A5A8TX70 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A5A8TX70 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC13.66□□□□□ -0.22
COL6A5A8TX70 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A5A8TX70 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A5A8TX70 AC018445.3-201ENST00000624177 1945 ntBASIC13.66□□□□□ -0.22
COL6A5A8TX70 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC13.66□□□□□ -0.22
COL6A5A8TX70 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
COL6A5A8TX70 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A5A8TX70 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC13.65□□□□□ -0.22
COL6A5A8TX70 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL6A5A8TX70 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL6A5A8TX70 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
COL6A5A8TX70 AL353593.2-201ENST00000602529 1483 ntBASIC13.65□□□□□ -0.22
COL6A5A8TX70 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC13.65□□□□□ -0.22
COL6A5A8TX70 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC13.65□□□□□ -0.22
COL6A5A8TX70 AC104794.3-201ENST00000566840 1248 ntBASIC13.65□□□□□ -0.22
COL6A5A8TX70 AC003101.2-201ENST00000612557 442 ntBASIC13.65□□□□□ -0.22
COL6A5A8TX70 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL6A5A8TX70 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC13.65□□□□□ -0.22
COL6A5A8TX70 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC13.65□□□□□ -0.22
COL6A5A8TX70 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
COL6A5A8TX70 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
COL6A5A8TX70 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC13.65□□□□□ -0.22
COL6A5A8TX70 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC13.65□□□□□ -0.22
COL6A5A8TX70 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
COL6A5A8TX70 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC13.65□□□□□ -0.22
COL6A5A8TX70 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
COL6A5A8TX70 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL6A5A8TX70 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
COL6A5A8TX70 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC13.65□□□□□ -0.22
COL6A5A8TX70 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC13.65□□□□□ -0.22
COL6A5A8TX70 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL6A5A8TX70 REXO1L6P-201ENST00000603433 1515 ntBASIC13.65□□□□□ -0.22
COL6A5A8TX70 MPV17-208ENST00000405076 603 ntTSL 5 BASIC13.65□□□□□ -0.22
COL6A5A8TX70 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
COL6A5A8TX70 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC13.65□□□□□ -0.22
COL6A5A8TX70 IGHV3OR16-16-201ENST00000563644 343 ntBASIC13.65□□□□□ -0.22
COL6A5A8TX70 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC13.65□□□□□ -0.22
COL6A5A8TX70 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC13.65□□□□□ -0.22
COL6A5A8TX70 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
COL6A5A8TX70 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
COL6A5A8TX70 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC13.65□□□□□ -0.23
COL6A5A8TX70 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.23
COL6A5A8TX70 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A5A8TX70 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC13.64□□□□□ -0.23
COL6A5A8TX70 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A5A8TX70 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A5A8TX70 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A5A8TX70 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A5A8TX70 FAM86MP-201ENST00000340703 885 ntBASIC13.64□□□□□ -0.23
COL6A5A8TX70 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC13.64□□□□□ -0.23
COL6A5A8TX70 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A5A8TX70 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC13.64□□□□□ -0.23
COL6A5A8TX70 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC13.64□□□□□ -0.23
COL6A5A8TX70 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
COL6A5A8TX70 ARL16-210ENST00000574938 751 ntTSL 2 BASIC13.64□□□□□ -0.23
COL6A5A8TX70 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
COL6A5A8TX70 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
COL6A5A8TX70 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A5A8TX70 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC13.64□□□□□ -0.23
COL6A5A8TX70 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A5A8TX70 LINC00565-201ENST00000562710 2331 ntBASIC13.64□□□□□ -0.23
COL6A5A8TX70 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A5A8TX70 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A5A8TX70 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A5A8TX70 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC13.64□□□□□ -0.23
COL6A5A8TX70 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A5A8TX70 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC13.64□□□□□ -0.23
COL6A5A8TX70 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A5A8TX70 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A5A8TX70 MXI1-205ENST00000393134 889 ntTSL 2 BASIC13.64□□□□□ -0.23
COL6A5A8TX70 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A5A8TX70 ACTBP11-201ENST00000436287 1126 ntBASIC13.64□□□□□ -0.23
COL6A5A8TX70 IGHV3-42-201ENST00000520410 361 ntBASIC13.64□□□□□ -0.23
COL6A5A8TX70 USB1-203ENST00000539737 1212 ntTSL 2 BASIC13.64□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms