Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC16.45■□□□□ 0.22
CPSF4LA6NMK7 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CPSF4LA6NMK7 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CPSF4LA6NMK7 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CPSF4LA6NMK7 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CPSF4LA6NMK7 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.45■□□□□ 0.22
CPSF4LA6NMK7 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.45■□□□□ 0.22
CPSF4LA6NMK7 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
CPSF4LA6NMK7 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
CPSF4LA6NMK7 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.45■□□□□ 0.22
CPSF4LA6NMK7 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
CPSF4LA6NMK7 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CPSF4LA6NMK7 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
CPSF4LA6NMK7 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 AC080080.1-201ENST00000625121 2420 ntBASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 AC034232.1-201ENST00000506026 1064 ntBASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 CD81-212ENST00000526072 1172 ntTSL 5 BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 DUT-205ENST00000558813 769 ntTSL 2 BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CPSF4LA6NMK7 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 SIRPAP1-201ENST00000448467 1770 ntBASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 AC087499.1-201ENST00000418141 1075 ntBASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 RPS20-210ENST00000523936 899 ntTSL 2 BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 AC133963.1-201ENST00000504166 1679 ntBASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CPSF4LA6NMK7 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 AC009949.1-201ENST00000623048 1830 ntBASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CPSF4LA6NMK7 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms