Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC39Q9UFE4 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC39Q9UFE4 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC20.65■□□□□ 0.9
CCDC39Q9UFE4 Telomerase-vert.1-201ENST00000363312 438 ntBASIC20.65■□□□□ 0.9
CCDC39Q9UFE4 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
CCDC39Q9UFE4 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
CCDC39Q9UFE4 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
CCDC39Q9UFE4 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC20.65■□□□□ 0.9
CCDC39Q9UFE4 AC010240.3-201ENST00000607688 395 ntBASIC20.65■□□□□ 0.9
CCDC39Q9UFE4 AC024243.1-201ENST00000609234 778 ntBASIC20.65■□□□□ 0.9
CCDC39Q9UFE4 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.65■□□□□ 0.9
CCDC39Q9UFE4 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.65■□□□□ 0.9
CCDC39Q9UFE4 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
CCDC39Q9UFE4 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
CCDC39Q9UFE4 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC39Q9UFE4 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC39Q9UFE4 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC39Q9UFE4 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC39Q9UFE4 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC39Q9UFE4 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC39Q9UFE4 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC39Q9UFE4 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC39Q9UFE4 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC20.64■□□□□ 0.9
CCDC39Q9UFE4 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.9
CCDC39Q9UFE4 AC011270.2-201ENST00000624293 2550 ntBASIC20.64■□□□□ 0.9
CCDC39Q9UFE4 AC099343.3-201ENST00000605834 2503 ntBASIC20.64■□□□□ 0.9
CCDC39Q9UFE4 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
CCDC39Q9UFE4 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC39Q9UFE4 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC39Q9UFE4 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC20.64■□□□□ 0.89
CCDC39Q9UFE4 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC39Q9UFE4 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC39Q9UFE4 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC39Q9UFE4 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC39Q9UFE4 ECEL1P3-201ENST00000427961 737 ntBASIC20.64■□□□□ 0.89
CCDC39Q9UFE4 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC39Q9UFE4 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC20.64■□□□□ 0.89
CCDC39Q9UFE4 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
CCDC39Q9UFE4 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC20.64■□□□□ 0.89
CCDC39Q9UFE4 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC20.64■□□□□ 0.89
CCDC39Q9UFE4 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC39Q9UFE4 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC20.64■□□□□ 0.89
CCDC39Q9UFE4 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC39Q9UFE4 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC20.64■□□□□ 0.89
CCDC39Q9UFE4 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC20.64■□□□□ 0.89
CCDC39Q9UFE4 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC39Q9UFE4 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC39Q9UFE4 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC39Q9UFE4 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC39Q9UFE4 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 LINC00602-201ENST00000629776 2065 ntBASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 SEC1P-202ENST00000473944 940 ntBASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 AC073912.3-201ENST00000624414 853 ntBASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 HLA-DQB1-201ENST00000374943 1656 ntBASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC39Q9UFE4 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC39Q9UFE4 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms