Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
ZNF541Q9H0D2 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
ZNF541Q9H0D2 AC097637.2-201ENST00000624096 1997 ntBASIC21.19■□□□□ 0.98
ZNF541Q9H0D2 HNRNPFP1-201ENST00000391730 1133 ntBASIC21.19■□□□□ 0.98
ZNF541Q9H0D2 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
ZNF541Q9H0D2 AL627223.1-201ENST00000416693 442 ntBASIC21.19■□□□□ 0.98
ZNF541Q9H0D2 CXCL1P1-201ENST00000502804 216 ntBASIC21.19■□□□□ 0.98
ZNF541Q9H0D2 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC21.19■□□□□ 0.98
ZNF541Q9H0D2 POLD4-211ENST00000539074 714 ntTSL 3 BASIC21.19■□□□□ 0.98
ZNF541Q9H0D2 IGHV3OR16-6-201ENST00000568775 360 ntBASIC21.19■□□□□ 0.98
ZNF541Q9H0D2 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
ZNF541Q9H0D2 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC21.19■□□□□ 0.98
ZNF541Q9H0D2 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC21.19■□□□□ 0.98
ZNF541Q9H0D2 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC21.19■□□□□ 0.98
ZNF541Q9H0D2 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC21.19■□□□□ 0.98
ZNF541Q9H0D2 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC21.19■□□□□ 0.98
ZNF541Q9H0D2 AC063926.2-201ENST00000623766 1308 ntBASIC21.19■□□□□ 0.98
ZNF541Q9H0D2 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
ZNF541Q9H0D2 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC21.18■□□□□ 0.98
ZNF541Q9H0D2 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC21.18■□□□□ 0.98
ZNF541Q9H0D2 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
ZNF541Q9H0D2 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC21.18■□□□□ 0.98
ZNF541Q9H0D2 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC21.18■□□□□ 0.98
ZNF541Q9H0D2 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
ZNF541Q9H0D2 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
ZNF541Q9H0D2 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
ZNF541Q9H0D2 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
ZNF541Q9H0D2 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
ZNF541Q9H0D2 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC21.18■□□□□ 0.98
ZNF541Q9H0D2 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC21.18■□□□□ 0.98
ZNF541Q9H0D2 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC21.18■□□□□ 0.98
ZNF541Q9H0D2 RNA5SP421-201ENST00000516864 134 ntBASIC21.18■□□□□ 0.98
ZNF541Q9H0D2 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC21.18■□□□□ 0.98
ZNF541Q9H0D2 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
ZNF541Q9H0D2 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
ZNF541Q9H0D2 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC21.18■□□□□ 0.98
ZNF541Q9H0D2 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC21.18■□□□□ 0.98
ZNF541Q9H0D2 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.18■□□□□ 0.98
ZNF541Q9H0D2 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 AC093010.1-201ENST00000473625 1624 ntBASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 GK-202ENST00000378941 458 ntTSL 3 BASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 AC002472.2-201ENST00000442739 958 ntBASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 AC005225.4-201ENST00000557330 545 ntBASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 AC087641.1-201ENST00000557561 1021 ntBASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 TMED1-207ENST00000591695 809 ntTSL 5 BASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 AC018445.3-201ENST00000624177 1945 ntBASIC21.17■□□□□ 0.98
ZNF541Q9H0D2 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ZNF541Q9H0D2 ADM-207ENST00000530439 1839 ntTSL 2 BASIC21.16■□□□□ 0.98
ZNF541Q9H0D2 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
ZNF541Q9H0D2 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
ZNF541Q9H0D2 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
ZNF541Q9H0D2 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
ZNF541Q9H0D2 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
ZNF541Q9H0D2 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
ZNF541Q9H0D2 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC21.16■□□□□ 0.98
ZNF541Q9H0D2 LINC00982-205ENST00000420957 435 ntBASIC21.16■□□□□ 0.98
ZNF541Q9H0D2 TIMM8BP1-201ENST00000452384 211 ntBASIC21.16■□□□□ 0.98
ZNF541Q9H0D2 INGX-202ENST00000489074 768 ntBASIC21.16■□□□□ 0.98
ZNF541Q9H0D2 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC21.16■□□□□ 0.98
ZNF541Q9H0D2 AC109462.3-201ENST00000573934 613 ntBASIC21.16■□□□□ 0.98
ZNF541Q9H0D2 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC21.16■□□□□ 0.98
ZNF541Q9H0D2 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ZNF541Q9H0D2 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ZNF541Q9H0D2 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
ZNF541Q9H0D2 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
ZNF541Q9H0D2 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
ZNF541Q9H0D2 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC21.15■□□□□ 0.98
ZNF541Q9H0D2 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms