Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
IFT140Q96RY7 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
IFT140Q96RY7 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
IFT140Q96RY7 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC29.23■■■□□ 2.27
IFT140Q96RY7 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC29.23■■■□□ 2.27
IFT140Q96RY7 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC29.23■■■□□ 2.27
IFT140Q96RY7 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC29.23■■■□□ 2.27
IFT140Q96RY7 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC29.23■■■□□ 2.27
IFT140Q96RY7 ESPNP-201ENST00000270691 2015 ntBASIC29.23■■■□□ 2.27
IFT140Q96RY7 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
IFT140Q96RY7 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC29.23■■■□□ 2.27
IFT140Q96RY7 AL671277.1-201ENST00000429656 993 ntBASIC29.23■■■□□ 2.27
IFT140Q96RY7 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
IFT140Q96RY7 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC29.23■■■□□ 2.27
IFT140Q96RY7 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC29.23■■■□□ 2.27
IFT140Q96RY7 AL596325.1-201ENST00000563991 1082 ntBASIC29.23■■■□□ 2.27
IFT140Q96RY7 RAB34-224ENST00000636513 888 ntTSL 5 BASIC29.23■■■□□ 2.27
IFT140Q96RY7 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC29.22■■■□□ 2.27
IFT140Q96RY7 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC29.22■■■□□ 2.27
IFT140Q96RY7 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC29.22■■■□□ 2.27
IFT140Q96RY7 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
IFT140Q96RY7 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC29.22■■■□□ 2.27
IFT140Q96RY7 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC29.22■■■□□ 2.27
IFT140Q96RY7 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC29.22■■■□□ 2.27
IFT140Q96RY7 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC29.22■■■□□ 2.27
IFT140Q96RY7 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC29.22■■■□□ 2.27
IFT140Q96RY7 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC29.22■■■□□ 2.27
IFT140Q96RY7 SRP9-204ENST00000619790 377 ntTSL 2 BASIC29.22■■■□□ 2.27
IFT140Q96RY7 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC29.22■■■□□ 2.27
IFT140Q96RY7 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
IFT140Q96RY7 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC29.22■■■□□ 2.27
IFT140Q96RY7 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC29.22■■■□□ 2.27
IFT140Q96RY7 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC29.22■■■□□ 2.27
IFT140Q96RY7 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC29.21■■■□□ 2.27
IFT140Q96RY7 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC29.21■■■□□ 2.27
IFT140Q96RY7 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
IFT140Q96RY7 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
IFT140Q96RY7 NME2P1-201ENST00000426182 414 ntBASIC29.21■■■□□ 2.27
IFT140Q96RY7 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC29.21■■■□□ 2.27
IFT140Q96RY7 RN7SL692P-201ENST00000464677 288 ntBASIC29.21■■■□□ 2.27
IFT140Q96RY7 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC29.21■■■□□ 2.27
IFT140Q96RY7 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC29.21■■■□□ 2.27
IFT140Q96RY7 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
IFT140Q96RY7 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC29.2■■■□□ 2.27
IFT140Q96RY7 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
IFT140Q96RY7 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC29.2■■■□□ 2.27
IFT140Q96RY7 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC29.2■■■□□ 2.27
IFT140Q96RY7 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC29.2■■■□□ 2.27
IFT140Q96RY7 SERBP1P5-201ENST00000510079 1181 ntBASIC29.2■■■□□ 2.26
IFT140Q96RY7 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC29.2■■■□□ 2.26
IFT140Q96RY7 COQ9-214ENST00000567933 882 ntTSL 3 BASIC29.2■■■□□ 2.26
IFT140Q96RY7 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC29.2■■■□□ 2.26
IFT140Q96RY7 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC29.2■■■□□ 2.26
IFT140Q96RY7 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
IFT140Q96RY7 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
IFT140Q96RY7 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC29.2■■■□□ 2.26
IFT140Q96RY7 PC-208ENST00000529047 1607 ntTSL 3 BASIC29.2■■■□□ 2.26
IFT140Q96RY7 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC29.2■■■□□ 2.26
IFT140Q96RY7 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC29.19■■■□□ 2.26
IFT140Q96RY7 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
IFT140Q96RY7 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC29.19■■■□□ 2.26
IFT140Q96RY7 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC29.19■■■□□ 2.26
IFT140Q96RY7 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC29.19■■■□□ 2.26
IFT140Q96RY7 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
IFT140Q96RY7 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
IFT140Q96RY7 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC29.19■■■□□ 2.26
IFT140Q96RY7 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC29.19■■■□□ 2.26
IFT140Q96RY7 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
IFT140Q96RY7 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC29.19■■■□□ 2.26
IFT140Q96RY7 THTPA-204ENST00000554970 569 ntTSL 4 BASIC29.19■■■□□ 2.26
IFT140Q96RY7 THTPA-206ENST00000556015 535 ntTSL 3 BASIC29.19■■■□□ 2.26
IFT140Q96RY7 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC29.19■■■□□ 2.26
IFT140Q96RY7 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC29.19■■■□□ 2.26
IFT140Q96RY7 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC29.19■■■□□ 2.26
IFT140Q96RY7 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC29.19■■■□□ 2.26
IFT140Q96RY7 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC29.19■■■□□ 2.26
IFT140Q96RY7 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
IFT140Q96RY7 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
IFT140Q96RY7 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
IFT140Q96RY7 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC29.18■■■□□ 2.26
IFT140Q96RY7 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
IFT140Q96RY7 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC29.18■■■□□ 2.26
IFT140Q96RY7 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC29.18■■■□□ 2.26
IFT140Q96RY7 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC29.18■■■□□ 2.26
IFT140Q96RY7 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC29.18■■■□□ 2.26
IFT140Q96RY7 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC29.18■■■□□ 2.26
IFT140Q96RY7 RARRES2P8-201ENST00000566335 367 ntBASIC29.18■■■□□ 2.26
IFT140Q96RY7 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC29.18■■■□□ 2.26
IFT140Q96RY7 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC29.18■■■□□ 2.26
IFT140Q96RY7 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC29.18■■■□□ 2.26
IFT140Q96RY7 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC29.18■■■□□ 2.26
IFT140Q96RY7 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC29.18■■■□□ 2.26
IFT140Q96RY7 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
IFT140Q96RY7 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
IFT140Q96RY7 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
IFT140Q96RY7 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
IFT140Q96RY7 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
IFT140Q96RY7 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
IFT140Q96RY7 MRPS18AP1-201ENST00000414458 589 ntBASIC29.17■■■□□ 2.26
IFT140Q96RY7 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC29.17■■■□□ 2.26
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms