Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC19.74■□□□□ 0.75
HPS3Q969F9 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HPS3Q969F9 BAALC-202ENST00000306391 243 ntTSL 5 BASIC19.74■□□□□ 0.75
HPS3Q969F9 BAALC-204ENST00000330955 222 ntTSL 5 BASIC19.74■□□□□ 0.75
HPS3Q969F9 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HPS3Q969F9 DDT-203ENST00000403754 569 ntTSL 3 BASIC19.74■□□□□ 0.75
HPS3Q969F9 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC19.74■□□□□ 0.75
HPS3Q969F9 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC19.74■□□□□ 0.75
HPS3Q969F9 DDT-206ENST00000430101 573 ntTSL 2 BASIC19.74■□□□□ 0.75
HPS3Q969F9 RN7SL606P-201ENST00000472779 293 ntBASIC19.74■□□□□ 0.75
HPS3Q969F9 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC19.74■□□□□ 0.75
HPS3Q969F9 AL445228.2-201ENST00000605589 952 ntBASIC19.74■□□□□ 0.75
HPS3Q969F9 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC19.74■□□□□ 0.75
HPS3Q969F9 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.74■□□□□ 0.75
HPS3Q969F9 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.74■□□□□ 0.75
HPS3Q969F9 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HPS3Q969F9 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
HPS3Q969F9 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HPS3Q969F9 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HPS3Q969F9 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HPS3Q969F9 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC19.74■□□□□ 0.75
HPS3Q969F9 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
HPS3Q969F9 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HPS3Q969F9 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC19.73■□□□□ 0.75
HPS3Q969F9 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HPS3Q969F9 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
HPS3Q969F9 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HPS3Q969F9 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HPS3Q969F9 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
HPS3Q969F9 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HPS3Q969F9 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HPS3Q969F9 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HPS3Q969F9 AC091607.1-201ENST00000490318 1060 ntBASIC19.73■□□□□ 0.75
HPS3Q969F9 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC19.73■□□□□ 0.75
HPS3Q969F9 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC19.73■□□□□ 0.75
HPS3Q969F9 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC19.73■□□□□ 0.75
HPS3Q969F9 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC19.73■□□□□ 0.75
HPS3Q969F9 AC124864.1-201ENST00000623408 392 ntBASIC19.73■□□□□ 0.75
HPS3Q969F9 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HPS3Q969F9 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HPS3Q969F9 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HPS3Q969F9 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HPS3Q969F9 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HPS3Q969F9 LINC00304-203ENST00000565008 1864 ntBASIC19.73■□□□□ 0.75
HPS3Q969F9 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC19.73■□□□□ 0.75
HPS3Q969F9 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
HPS3Q969F9 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HPS3Q969F9 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HPS3Q969F9 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HPS3Q969F9 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HPS3Q969F9 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
HPS3Q969F9 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC19.72■□□□□ 0.75
HPS3Q969F9 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HPS3Q969F9 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HPS3Q969F9 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HPS3Q969F9 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
HPS3Q969F9 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HPS3Q969F9 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HPS3Q969F9 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC19.72■□□□□ 0.75
HPS3Q969F9 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HPS3Q969F9 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HPS3Q969F9 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
HPS3Q969F9 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HPS3Q969F9 PCED1CP-201ENST00000419887 785 ntBASIC19.72■□□□□ 0.75
HPS3Q969F9 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HPS3Q969F9 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC19.72■□□□□ 0.75
HPS3Q969F9 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC19.72■□□□□ 0.75
HPS3Q969F9 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
HPS3Q969F9 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HPS3Q969F9 AC010331.1-201ENST00000611423 582 ntBASIC19.72■□□□□ 0.75
HPS3Q969F9 AL592071.1-201ENST00000611956 408 ntBASIC19.72■□□□□ 0.75
HPS3Q969F9 AC116407.4-201ENST00000623319 1061 ntBASIC19.72■□□□□ 0.75
HPS3Q969F9 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
HPS3Q969F9 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC19.72■□□□□ 0.75
HPS3Q969F9 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
HPS3Q969F9 AL645608.8-201ENST00000606034 2086 ntBASIC19.72■□□□□ 0.75
HPS3Q969F9 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
HPS3Q969F9 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
HPS3Q969F9 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC19.72■□□□□ 0.75
HPS3Q969F9 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HPS3Q969F9 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HPS3Q969F9 AC016734.2-201ENST00000624325 1377 ntBASIC19.71■□□□□ 0.75
HPS3Q969F9 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HPS3Q969F9 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HPS3Q969F9 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HPS3Q969F9 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HPS3Q969F9 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
HPS3Q969F9 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.71■□□□□ 0.75
HPS3Q969F9 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
HPS3Q969F9 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC19.71■□□□□ 0.75
HPS3Q969F9 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
HPS3Q969F9 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
HPS3Q969F9 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HPS3Q969F9 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
HPS3Q969F9 BANP-227ENST00000626016 2144 ntTSL 2 BASIC19.71■□□□□ 0.75
HPS3Q969F9 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
HPS3Q969F9 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HPS3Q969F9 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HPS3Q969F9 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC19.71■□□□□ 0.75
HPS3Q969F9 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms