Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 AC112698.1-201ENST00000510299 916 ntBASIC16.54■□□□□ 0.24
BEST3Q8N1M1 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 AC009533.2-201ENST00000543664 586 ntBASIC16.54■□□□□ 0.24
BEST3Q8N1M1 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 AL138831.2-201ENST00000606564 490 ntBASIC16.54■□□□□ 0.24
BEST3Q8N1M1 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
BEST3Q8N1M1 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC16.53■□□□□ 0.24
BEST3Q8N1M1 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC16.53■□□□□ 0.24
BEST3Q8N1M1 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
BEST3Q8N1M1 AC132938.6-201ENST00000623828 1655 ntBASIC16.53■□□□□ 0.24
BEST3Q8N1M1 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
BEST3Q8N1M1 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
BEST3Q8N1M1 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
BEST3Q8N1M1 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.53■□□□□ 0.24
BEST3Q8N1M1 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC16.53■□□□□ 0.24
BEST3Q8N1M1 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
BEST3Q8N1M1 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC16.53■□□□□ 0.24
BEST3Q8N1M1 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
BEST3Q8N1M1 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
BEST3Q8N1M1 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
BEST3Q8N1M1 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.53■□□□□ 0.24
BEST3Q8N1M1 AC132008.2-207ENST00000454517 770 ntBASIC16.53■□□□□ 0.24
BEST3Q8N1M1 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC16.53■□□□□ 0.24
BEST3Q8N1M1 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.53■□□□□ 0.24
BEST3Q8N1M1 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.53■□□□□ 0.24
BEST3Q8N1M1 SLC25A6P4-201ENST00000586535 553 ntBASIC16.53■□□□□ 0.24
BEST3Q8N1M1 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
BEST3Q8N1M1 AC073592.3-201ENST00000625118 1834 ntBASIC16.53■□□□□ 0.24
BEST3Q8N1M1 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.53■□□□□ 0.24
BEST3Q8N1M1 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
BEST3Q8N1M1 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
BEST3Q8N1M1 COMP-202ENST00000425807 2292 ntTSL 2 BASIC16.53■□□□□ 0.24
BEST3Q8N1M1 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
BEST3Q8N1M1 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
BEST3Q8N1M1 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
BEST3Q8N1M1 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
BEST3Q8N1M1 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
BEST3Q8N1M1 AC125634.1-201ENST00000438758 1403 ntBASIC16.53■□□□□ 0.24
BEST3Q8N1M1 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC16.53■□□□□ 0.24
BEST3Q8N1M1 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
BEST3Q8N1M1 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
BEST3Q8N1M1 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
BEST3Q8N1M1 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC16.52■□□□□ 0.24
BEST3Q8N1M1 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC16.52■□□□□ 0.24
BEST3Q8N1M1 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
BEST3Q8N1M1 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
BEST3Q8N1M1 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
BEST3Q8N1M1 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
BEST3Q8N1M1 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC16.52■□□□□ 0.24
BEST3Q8N1M1 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
BEST3Q8N1M1 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
BEST3Q8N1M1 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
BEST3Q8N1M1 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
BEST3Q8N1M1 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
BEST3Q8N1M1 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC16.52■□□□□ 0.24
BEST3Q8N1M1 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
BEST3Q8N1M1 MRPL3P1-201ENST00000400109 1033 ntBASIC16.52■□□□□ 0.24
BEST3Q8N1M1 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
BEST3Q8N1M1 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC16.52■□□□□ 0.24
BEST3Q8N1M1 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
BEST3Q8N1M1 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
BEST3Q8N1M1 VPS51-217ENST00000639871 243 ntTSL 5 BASIC16.52■□□□□ 0.24
BEST3Q8N1M1 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
BEST3Q8N1M1 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
BEST3Q8N1M1 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
BEST3Q8N1M1 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
BEST3Q8N1M1 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
BEST3Q8N1M1 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.51■□□□□ 0.23
BEST3Q8N1M1 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms