Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PPP4R4Q6NUP7 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.12■□□□□ 0.33
PPP4R4Q6NUP7 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PPP4R4Q6NUP7 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC17.12■□□□□ 0.33
PPP4R4Q6NUP7 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.12■□□□□ 0.33
PPP4R4Q6NUP7 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PPP4R4Q6NUP7 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PPP4R4Q6NUP7 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PPP4R4Q6NUP7 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PPP4R4Q6NUP7 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PPP4R4Q6NUP7 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC17.12■□□□□ 0.33
PPP4R4Q6NUP7 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
PPP4R4Q6NUP7 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PPP4R4Q6NUP7 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PPP4R4Q6NUP7 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 KRT8P11-201ENST00000409686 1436 ntBASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PPP4R4Q6NUP7 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 KRT18P21-201ENST00000515767 1272 ntBASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 AP005242.2-201ENST00000580065 1175 ntBASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 KRT8P3-201ENST00000519669 1449 ntBASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 PHGDH-209ENST00000641074 1780 ntBASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PPP4R4Q6NUP7 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PPP4R4Q6NUP7 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms