Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 RPS15-203ENST00000586096 570 ntTSL 2 BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 NAT14-202ENST00000587400 416 ntTSL 5 BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
CCDC58Q4VC31 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 BANP-227ENST00000626016 2144 ntTSL 2 BASIC15.97■□□□□ 0.15
CCDC58Q4VC31 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 AC133963.1-201ENST00000504166 1679 ntBASIC15.96■□□□□ 0.15
CCDC58Q4VC31 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.96■□□□□ 0.15
CCDC58Q4VC31 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 MFAP1P1-201ENST00000442257 1255 ntBASIC15.96■□□□□ 0.15
CCDC58Q4VC31 ADM-205ENST00000528544 586 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 MIR3180-4-201ENST00000582223 153 ntBASIC15.96■□□□□ 0.15
CCDC58Q4VC31 AC073648.6-201ENST00000641589 218 ntBASIC15.96■□□□□ 0.15
CCDC58Q4VC31 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC15.96■□□□□ 0.15
CCDC58Q4VC31 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
CCDC58Q4VC31 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
CCDC58Q4VC31 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.14
CCDC58Q4VC31 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.14
CCDC58Q4VC31 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC15.96■□□□□ 0.14
CCDC58Q4VC31 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC15.95■□□□□ 0.14
CCDC58Q4VC31 PCDHB19P-201ENST00000570871 2371 ntBASIC15.95■□□□□ 0.14
CCDC58Q4VC31 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC58Q4VC31 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC58Q4VC31 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCDC58Q4VC31 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
CCDC58Q4VC31 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.95■□□□□ 0.14
CCDC58Q4VC31 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC15.95■□□□□ 0.14
CCDC58Q4VC31 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms