Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP41Q3LFD5 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.9■□□□□ 0.62
USP41Q3LFD5 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.9■□□□□ 0.62
USP41Q3LFD5 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.9■□□□□ 0.62
USP41Q3LFD5 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
USP41Q3LFD5 RNA5SP415-201ENST00000517246 115 ntBASIC18.9■□□□□ 0.62
USP41Q3LFD5 AC034105.1-201ENST00000563488 319 ntBASIC18.9■□□□□ 0.62
USP41Q3LFD5 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.9■□□□□ 0.62
USP41Q3LFD5 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP41Q3LFD5 FAM197Y3-203ENST00000618346 717 ntBASIC18.9■□□□□ 0.62
USP41Q3LFD5 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC18.9■□□□□ 0.62
USP41Q3LFD5 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
USP41Q3LFD5 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP41Q3LFD5 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP41Q3LFD5 AL138781.2-201ENST00000617896 1843 ntBASIC18.9■□□□□ 0.62
USP41Q3LFD5 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP41Q3LFD5 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC18.9■□□□□ 0.62
USP41Q3LFD5 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
USP41Q3LFD5 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
USP41Q3LFD5 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP41Q3LFD5 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.9■□□□□ 0.62
USP41Q3LFD5 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.9■□□□□ 0.62
USP41Q3LFD5 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.62
USP41Q3LFD5 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.89■□□□□ 0.62
USP41Q3LFD5 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.62
USP41Q3LFD5 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.62
USP41Q3LFD5 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.89■□□□□ 0.62
USP41Q3LFD5 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.62
USP41Q3LFD5 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
USP41Q3LFD5 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP41Q3LFD5 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP41Q3LFD5 AC020916.1-201ENST00000587762 1774 ntBASIC18.89■□□□□ 0.61
USP41Q3LFD5 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP41Q3LFD5 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP41Q3LFD5 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP41Q3LFD5 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP41Q3LFD5 COX10-202ENST00000429152 875 ntTSL 2 BASIC18.89■□□□□ 0.61
USP41Q3LFD5 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC18.89■□□□□ 0.61
USP41Q3LFD5 PRYP5-201ENST00000451909 266 ntBASIC18.89■□□□□ 0.61
USP41Q3LFD5 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP41Q3LFD5 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC18.89■□□□□ 0.61
USP41Q3LFD5 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC18.89■□□□□ 0.61
USP41Q3LFD5 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.89■□□□□ 0.61
USP41Q3LFD5 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
USP41Q3LFD5 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.89■□□□□ 0.61
USP41Q3LFD5 Z83851.2-201ENST00000609564 659 ntBASIC18.89■□□□□ 0.61
USP41Q3LFD5 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
USP41Q3LFD5 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP41Q3LFD5 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
USP41Q3LFD5 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP41Q3LFD5 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC18.89■□□□□ 0.61
USP41Q3LFD5 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP41Q3LFD5 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP41Q3LFD5 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP41Q3LFD5 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP41Q3LFD5 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.89■□□□□ 0.61
USP41Q3LFD5 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP41Q3LFD5 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP41Q3LFD5 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
USP41Q3LFD5 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
USP41Q3LFD5 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.88■□□□□ 0.61
USP41Q3LFD5 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP41Q3LFD5 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
USP41Q3LFD5 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
USP41Q3LFD5 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP41Q3LFD5 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP41Q3LFD5 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP41Q3LFD5 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
USP41Q3LFD5 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC18.88■□□□□ 0.61
USP41Q3LFD5 LBH-204ENST00000406087 559 ntTSL 4 BASIC18.88■□□□□ 0.61
USP41Q3LFD5 BX842568.4-201ENST00000421222 227 ntBASIC18.88■□□□□ 0.61
USP41Q3LFD5 AL591424.1-201ENST00000442569 1213 ntBASIC18.88■□□□□ 0.61
USP41Q3LFD5 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP41Q3LFD5 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
USP41Q3LFD5 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC18.88■□□□□ 0.61
USP41Q3LFD5 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
USP41Q3LFD5 SIGLEC16-201ENST00000599858 1437 ntBASIC18.88■□□□□ 0.61
USP41Q3LFD5 AP002414.3-201ENST00000589352 1468 ntBASIC18.88■□□□□ 0.61
USP41Q3LFD5 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
USP41Q3LFD5 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
USP41Q3LFD5 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.88■□□□□ 0.61
USP41Q3LFD5 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.88■□□□□ 0.61
USP41Q3LFD5 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.88■□□□□ 0.61
USP41Q3LFD5 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
USP41Q3LFD5 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP41Q3LFD5 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.87■□□□□ 0.61
USP41Q3LFD5 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP41Q3LFD5 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP41Q3LFD5 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP41Q3LFD5 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP41Q3LFD5 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.87■□□□□ 0.61
USP41Q3LFD5 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP41Q3LFD5 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP41Q3LFD5 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP41Q3LFD5 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USP41Q3LFD5 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.87■□□□□ 0.61
USP41Q3LFD5 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP41Q3LFD5 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.87■□□□□ 0.61
USP41Q3LFD5 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
USP41Q3LFD5 MED15P5-201ENST00000423150 992 ntBASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms