Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 Z83836.1-201ENST00000624605 1642 ntBASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 AP002414.4-201ENST00000589764 1148 ntBASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTCHD3Q3KNS1 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 AL353692.3-201ENST00000407031 1396 ntBASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 TSPY12P-201ENST00000421279 868 ntBASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 GPR32P1-201ENST00000601788 811 ntBASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PTCHD3Q3KNS1 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 AL450487.1-201ENST00000426799 995 ntBASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 CHCHD2P8-201ENST00000429873 447 ntBASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 MIR3180-1-201ENST00000580374 94 ntBASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 MIR3180-3-201ENST00000584616 94 ntBASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 AC005332.3-201ENST00000589904 676 ntBASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 AC009154.2-201ENST00000621177 724 ntBASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PTCHD3Q3KNS1 KRT18P1-202ENST00000452408 1331 ntBASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms