Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
SOX4Q06945 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SOX4Q06945 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SOX4Q06945 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.99■□□□□ 0.63
SOX4Q06945 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SOX4Q06945 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SOX4Q06945 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
SOX4Q06945 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
SOX4Q06945 RAB17-203ENST00000409576 466 ntTSL 3 BASIC18.99■□□□□ 0.63
SOX4Q06945 SPDYE21P-201ENST00000413323 827 ntBASIC18.99■□□□□ 0.63
SOX4Q06945 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.99■□□□□ 0.63
SOX4Q06945 DDX43P3-201ENST00000441064 443 ntBASIC18.99■□□□□ 0.63
SOX4Q06945 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SOX4Q06945 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.99■□□□□ 0.63
SOX4Q06945 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
SOX4Q06945 AL671883.3-201ENST00000603274 991 ntBASIC18.99■□□□□ 0.63
SOX4Q06945 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SOX4Q06945 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
SOX4Q06945 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
SOX4Q06945 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.99■□□□□ 0.63
SOX4Q06945 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.99■□□□□ 0.63
SOX4Q06945 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
SOX4Q06945 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SOX4Q06945 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SOX4Q06945 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.98■□□□□ 0.63
SOX4Q06945 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.98■□□□□ 0.63
SOX4Q06945 AC135050.7-201ENST00000624508 2218 ntBASIC18.98■□□□□ 0.63
SOX4Q06945 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SOX4Q06945 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.98■□□□□ 0.63
SOX4Q06945 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
SOX4Q06945 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.98■□□□□ 0.63
SOX4Q06945 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SOX4Q06945 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SOX4Q06945 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC18.98■□□□□ 0.63
SOX4Q06945 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SOX4Q06945 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SOX4Q06945 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SOX4Q06945 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SOX4Q06945 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SOX4Q06945 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SOX4Q06945 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.98■□□□□ 0.63
SOX4Q06945 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.98■□□□□ 0.63
SOX4Q06945 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.98■□□□□ 0.63
SOX4Q06945 AC139887.3-201ENST00000568585 713 ntBASIC18.98■□□□□ 0.63
SOX4Q06945 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.98■□□□□ 0.63
SOX4Q06945 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
SOX4Q06945 CYGB-205ENST00000590175 830 ntTSL 3 BASIC18.98■□□□□ 0.63
SOX4Q06945 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SOX4Q06945 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.98■□□□□ 0.63
SOX4Q06945 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.98■□□□□ 0.63
SOX4Q06945 AC116407.2-201ENST00000613639 860 ntBASIC18.98■□□□□ 0.63
SOX4Q06945 AC116407.3-201ENST00000623905 1129 ntBASIC18.98■□□□□ 0.63
SOX4Q06945 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.98■□□□□ 0.63
SOX4Q06945 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SOX4Q06945 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SOX4Q06945 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SOX4Q06945 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.98■□□□□ 0.63
SOX4Q06945 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.98■□□□□ 0.63
SOX4Q06945 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SOX4Q06945 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.98■□□□□ 0.63
SOX4Q06945 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
SOX4Q06945 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.98■□□□□ 0.63
SOX4Q06945 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SOX4Q06945 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SOX4Q06945 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.97■□□□□ 0.63
SOX4Q06945 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.97■□□□□ 0.63
SOX4Q06945 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.97■□□□□ 0.63
SOX4Q06945 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SOX4Q06945 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
SOX4Q06945 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SOX4Q06945 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
SOX4Q06945 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.97■□□□□ 0.63
SOX4Q06945 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SOX4Q06945 PC-208ENST00000529047 1607 ntTSL 3 BASIC18.97■□□□□ 0.63
SOX4Q06945 AC148477.5-201ENST00000625164 1645 ntBASIC18.97■□□□□ 0.63
SOX4Q06945 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.97■□□□□ 0.63
SOX4Q06945 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SOX4Q06945 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
SOX4Q06945 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC18.97■□□□□ 0.63
SOX4Q06945 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SOX4Q06945 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
SOX4Q06945 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.97■□□□□ 0.63
SOX4Q06945 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC18.97■□□□□ 0.63
SOX4Q06945 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SOX4Q06945 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC18.97■□□□□ 0.63
SOX4Q06945 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC18.97■□□□□ 0.63
SOX4Q06945 OR7E14P-202ENST00000530490 1290 ntBASIC18.97■□□□□ 0.63
SOX4Q06945 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
SOX4Q06945 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC18.97■□□□□ 0.63
SOX4Q06945 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.97■□□□□ 0.63
SOX4Q06945 RNF151-202ENST00000569210 853 ntTSL 2 BASIC18.97■□□□□ 0.63
SOX4Q06945 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC18.97■□□□□ 0.63
SOX4Q06945 AF228730.7-201ENST00000641842 219 ntBASIC18.97■□□□□ 0.63
SOX4Q06945 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.97■□□□□ 0.63
SOX4Q06945 SIGLEC16-201ENST00000599858 1437 ntBASIC18.97■□□□□ 0.63
SOX4Q06945 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SOX4Q06945 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.97■□□□□ 0.63
SOX4Q06945 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SOX4Q06945 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.97■□□□□ 0.63
SOX4Q06945 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms