Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDX1P47902 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CDX1P47902 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDX1P47902 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDX1P47902 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDX1P47902 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CDX1P47902 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.07
CDX1P47902 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CDX1P47902 GPAT2P1-201ENST00000444924 1672 ntBASIC14.58□□□□□ -0.07
CDX1P47902 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC14.58□□□□□ -0.07
CDX1P47902 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
CDX1P47902 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC14.58□□□□□ -0.07
CDX1P47902 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
CDX1P47902 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.07
CDX1P47902 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
CDX1P47902 KATNBL1P6-202ENST00000562413 1466 ntBASIC14.58□□□□□ -0.08
CDX1P47902 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC14.58□□□□□ -0.08
CDX1P47902 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CDX1P47902 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
CDX1P47902 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
CDX1P47902 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC14.58□□□□□ -0.08
CDX1P47902 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CDX1P47902 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CDX1P47902 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
CDX1P47902 IRX1P1-201ENST00000438849 1838 ntBASIC14.58□□□□□ -0.08
CDX1P47902 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CDX1P47902 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CDX1P47902 Telomerase-vert.1-201ENST00000363312 438 ntBASIC14.58□□□□□ -0.08
CDX1P47902 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CDX1P47902 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC14.58□□□□□ -0.08
CDX1P47902 AL023284.2-201ENST00000405850 579 ntBASIC14.58□□□□□ -0.08
CDX1P47902 AC009947.2-201ENST00000444014 672 ntBASIC14.58□□□□□ -0.08
CDX1P47902 MCCD1P1-208ENST00000445732 328 ntBASIC14.58□□□□□ -0.08
CDX1P47902 AC092647.4-201ENST00000457211 535 ntBASIC14.58□□□□□ -0.08
CDX1P47902 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CDX1P47902 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC14.58□□□□□ -0.08
CDX1P47902 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC14.58□□□□□ -0.08
CDX1P47902 TPM1-226ENST00000560959 925 ntTSL 2 BASIC14.58□□□□□ -0.08
CDX1P47902 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC14.58□□□□□ -0.08
CDX1P47902 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC14.58□□□□□ -0.08
CDX1P47902 NTF6B-201ENST00000591913 560 ntBASIC14.58□□□□□ -0.08
CDX1P47902 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
CDX1P47902 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CDX1P47902 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CDX1P47902 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC14.58□□□□□ -0.08
CDX1P47902 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CDX1P47902 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CDX1P47902 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CDX1P47902 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
CDX1P47902 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC14.58□□□□□ -0.08
CDX1P47902 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CDX1P47902 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
CDX1P47902 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CDX1P47902 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC14.58□□□□□ -0.08
CDX1P47902 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC14.58□□□□□ -0.08
CDX1P47902 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
CDX1P47902 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CDX1P47902 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
CDX1P47902 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC14.58□□□□□ -0.08
CDX1P47902 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
CDX1P47902 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CDX1P47902 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CDX1P47902 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CDX1P47902 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CDX1P47902 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC14.57□□□□□ -0.08
CDX1P47902 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CDX1P47902 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CDX1P47902 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC14.57□□□□□ -0.08
CDX1P47902 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CDX1P47902 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC14.57□□□□□ -0.08
CDX1P47902 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC14.57□□□□□ -0.08
CDX1P47902 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC14.57□□□□□ -0.08
CDX1P47902 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CDX1P47902 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
CDX1P47902 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CDX1P47902 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC14.57□□□□□ -0.08
CDX1P47902 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CDX1P47902 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC14.57□□□□□ -0.08
CDX1P47902 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC14.57□□□□□ -0.08
CDX1P47902 AL162741.1-201ENST00000565563 1558 ntBASIC14.57□□□□□ -0.08
CDX1P47902 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CDX1P47902 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CDX1P47902 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
CDX1P47902 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CDX1P47902 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CDX1P47902 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CDX1P47902 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC14.57□□□□□ -0.08
CDX1P47902 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CDX1P47902 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CDX1P47902 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CDX1P47902 ILF2-202ENST00000368681 726 ntTSL 2 BASIC14.57□□□□□ -0.08
CDX1P47902 GAD2-202ENST00000376248 680 ntTSL 5 BASIC14.57□□□□□ -0.08
CDX1P47902 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC14.57□□□□□ -0.08
CDX1P47902 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CDX1P47902 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC14.57□□□□□ -0.08
CDX1P47902 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC14.57□□□□□ -0.08
CDX1P47902 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC14.57□□□□□ -0.08
CDX1P47902 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC14.57□□□□□ -0.08
CDX1P47902 NT5C-210ENST00000582160 860 ntTSL 2 BASIC14.57□□□□□ -0.08
CDX1P47902 MIR3180-5-201ENST00000583743 153 ntBASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms