Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX2-1P43699 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX2-1P43699 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX2-1P43699 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX2-1P43699 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NKX2-1P43699 AC036111.1-201ENST00000533973 1582 ntBASIC14.61□□□□□ -0.07
NKX2-1P43699 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC14.61□□□□□ -0.07
NKX2-1P43699 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NKX2-1P43699 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NKX2-1P43699 KRT16P1-201ENST00000399124 1418 ntBASIC14.61□□□□□ -0.07
NKX2-1P43699 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX2-1P43699 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC14.61□□□□□ -0.07
NKX2-1P43699 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NKX2-1P43699 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NKX2-1P43699 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX2-1P43699 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX2-1P43699 BUB3-202ENST00000368859 667 ntTSL 3 BASIC14.61□□□□□ -0.07
NKX2-1P43699 GAS7-202ENST00000396115 929 ntTSL 5 BASIC14.61□□□□□ -0.07
NKX2-1P43699 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX2-1P43699 AC008040.2-201ENST00000461049 708 ntBASIC14.61□□□□□ -0.07
NKX2-1P43699 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC14.61□□□□□ -0.07
NKX2-1P43699 RNA5SP413-201ENST00000516373 109 ntBASIC14.61□□□□□ -0.07
NKX2-1P43699 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC14.61□□□□□ -0.07
NKX2-1P43699 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX2-1P43699 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC14.61□□□□□ -0.07
NKX2-1P43699 MIR3180-5-201ENST00000583743 153 ntBASIC14.61□□□□□ -0.07
NKX2-1P43699 AC130371.2-201ENST00000619443 611 ntBASIC14.61□□□□□ -0.07
NKX2-1P43699 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC14.61□□□□□ -0.07
NKX2-1P43699 HLA-J-201ENST00000462773 1622 ntBASIC14.61□□□□□ -0.07
NKX2-1P43699 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX2-1P43699 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX2-1P43699 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX2-1P43699 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NKX2-1P43699 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
NKX2-1P43699 LINC00304-203ENST00000565008 1864 ntBASIC14.61□□□□□ -0.07
NKX2-1P43699 ASL-204ENST00000395331 1538 ntTSL 5 BASIC14.61□□□□□ -0.07
NKX2-1P43699 STK24-203ENST00000397517 4578 ntTSL 2 BASIC14.61□□□□□ -0.07
NKX2-1P43699 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
NKX2-1P43699 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NKX2-1P43699 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX2-1P43699 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX2-1P43699 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC14.61□□□□□ -0.07
NKX2-1P43699 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NKX2-1P43699 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX2-1P43699 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC14.6□□□□□ -0.07
NKX2-1P43699 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC14.6□□□□□ -0.07
NKX2-1P43699 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC14.6□□□□□ -0.07
NKX2-1P43699 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC14.6□□□□□ -0.07
NKX2-1P43699 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC14.6□□□□□ -0.07
NKX2-1P43699 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC14.6□□□□□ -0.07
NKX2-1P43699 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC14.6□□□□□ -0.07
NKX2-1P43699 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX2-1P43699 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
NKX2-1P43699 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX2-1P43699 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC14.6□□□□□ -0.07
NKX2-1P43699 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC14.6□□□□□ -0.07
NKX2-1P43699 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX2-1P43699 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC14.6□□□□□ -0.07
NKX2-1P43699 AP003097.1-201ENST00000530657 1135 ntBASIC14.6□□□□□ -0.07
NKX2-1P43699 AC009065.1-201ENST00000564055 1225 ntBASIC14.6□□□□□ -0.07
NKX2-1P43699 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC14.6□□□□□ -0.07
NKX2-1P43699 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX2-1P43699 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC14.6□□□□□ -0.07
NKX2-1P43699 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX2-1P43699 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
NKX2-1P43699 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
NKX2-1P43699 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC14.6□□□□□ -0.07
NKX2-1P43699 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX2-1P43699 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC14.6□□□□□ -0.07
NKX2-1P43699 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC14.6□□□□□ -0.07
NKX2-1P43699 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX2-1P43699 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX2-1P43699 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC14.6□□□□□ -0.07
NKX2-1P43699 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC14.6□□□□□ -0.07
NKX2-1P43699 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
NKX2-1P43699 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
NKX2-1P43699 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
NKX2-1P43699 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
NKX2-1P43699 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
NKX2-1P43699 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC14.59□□□□□ -0.07
NKX2-1P43699 AC106886.4-201ENST00000623557 2502 ntBASIC14.59□□□□□ -0.07
NKX2-1P43699 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
NKX2-1P43699 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
NKX2-1P43699 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NKX2-1P43699 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NKX2-1P43699 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC14.59□□□□□ -0.07
NKX2-1P43699 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NKX2-1P43699 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
NKX2-1P43699 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC14.59□□□□□ -0.07
NKX2-1P43699 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
NKX2-1P43699 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
NKX2-1P43699 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC14.59□□□□□ -0.07
NKX2-1P43699 LY6E-205ENST00000519611 635 ntTSL 3 BASIC14.59□□□□□ -0.07
NKX2-1P43699 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC14.59□□□□□ -0.07
NKX2-1P43699 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC14.59□□□□□ -0.07
NKX2-1P43699 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC14.59□□□□□ -0.07
NKX2-1P43699 KRT18P6-201ENST00000555540 1265 ntBASIC14.59□□□□□ -0.07
NKX2-1P43699 NAT14-202ENST00000587400 416 ntTSL 5 BASIC14.59□□□□□ -0.07
NKX2-1P43699 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC14.59□□□□□ -0.07
NKX2-1P43699 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms