Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.32■□□□□ 0.36
HNF4AP41235 AP003733.1-201ENST00000491725 852 ntBASIC17.32■□□□□ 0.36
HNF4AP41235 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.32■□□□□ 0.36
HNF4AP41235 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.32■□□□□ 0.36
HNF4AP41235 CD320-202ENST00000537716 1119 ntTSL 2 BASIC17.32■□□□□ 0.36
HNF4AP41235 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.32■□□□□ 0.36
HNF4AP41235 AL445228.2-201ENST00000605589 952 ntBASIC17.32■□□□□ 0.36
HNF4AP41235 AC116407.2-201ENST00000613639 860 ntBASIC17.32■□□□□ 0.36
HNF4AP41235 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.32■□□□□ 0.36
HNF4AP41235 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
HNF4AP41235 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HNF4AP41235 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HNF4AP41235 AC012317.2-201ENST00000623305 2251 ntBASIC17.32■□□□□ 0.36
HNF4AP41235 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HNF4AP41235 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
HNF4AP41235 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
HNF4AP41235 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
HNF4AP41235 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.32■□□□□ 0.36
HNF4AP41235 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HNF4AP41235 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HNF4AP41235 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.32■□□□□ 0.36
HNF4AP41235 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HNF4AP41235 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HNF4AP41235 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HNF4AP41235 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HNF4AP41235 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
HNF4AP41235 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.31■□□□□ 0.36
HNF4AP41235 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
HNF4AP41235 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
HNF4AP41235 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
HNF4AP41235 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HNF4AP41235 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HNF4AP41235 MIR662-201ENST00000384847 95 ntBASIC17.31■□□□□ 0.36
HNF4AP41235 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HNF4AP41235 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.31■□□□□ 0.36
HNF4AP41235 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.31■□□□□ 0.36
HNF4AP41235 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.31■□□□□ 0.36
HNF4AP41235 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HNF4AP41235 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC17.31■□□□□ 0.36
HNF4AP41235 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC17.31■□□□□ 0.36
HNF4AP41235 AC004263.2-201ENST00000617183 678 ntBASIC17.31■□□□□ 0.36
HNF4AP41235 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HNF4AP41235 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HNF4AP41235 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HNF4AP41235 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HNF4AP41235 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HNF4AP41235 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HNF4AP41235 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
HNF4AP41235 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.31■□□□□ 0.36
HNF4AP41235 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HNF4AP41235 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HNF4AP41235 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
HNF4AP41235 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HNF4AP41235 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.3■□□□□ 0.36
HNF4AP41235 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HNF4AP41235 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.3■□□□□ 0.36
HNF4AP41235 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HNF4AP41235 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HNF4AP41235 AC100803.2-201ENST00000562459 1963 ntBASIC17.3■□□□□ 0.36
HNF4AP41235 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HNF4AP41235 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HNF4AP41235 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC17.3■□□□□ 0.36
HNF4AP41235 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC17.3■□□□□ 0.36
HNF4AP41235 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC17.3■□□□□ 0.36
HNF4AP41235 RMI2-205ENST00000576027 818 ntTSL 2 BASIC17.3■□□□□ 0.36
HNF4AP41235 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.3■□□□□ 0.36
HNF4AP41235 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.3■□□□□ 0.36
HNF4AP41235 AC009154.2-201ENST00000621177 724 ntBASIC17.3■□□□□ 0.36
HNF4AP41235 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
HNF4AP41235 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
HNF4AP41235 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HNF4AP41235 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HNF4AP41235 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
HNF4AP41235 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.3■□□□□ 0.36
HNF4AP41235 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HNF4AP41235 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.3■□□□□ 0.36
HNF4AP41235 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HNF4AP41235 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HNF4AP41235 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
HNF4AP41235 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HNF4AP41235 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.29■□□□□ 0.36
HNF4AP41235 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HNF4AP41235 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
HNF4AP41235 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HNF4AP41235 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HNF4AP41235 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HNF4AP41235 LINC00896-202ENST00000609602 2128 ntBASIC17.29■□□□□ 0.36
HNF4AP41235 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HNF4AP41235 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HNF4AP41235 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HNF4AP41235 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HNF4AP41235 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.29■□□□□ 0.36
HNF4AP41235 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.29■□□□□ 0.36
HNF4AP41235 IGHGP-201ENST00000390555 1178 ntBASIC17.29■□□□□ 0.36
HNF4AP41235 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HNF4AP41235 AL645929.1-201ENST00000420084 975 ntBASIC17.29■□□□□ 0.36
HNF4AP41235 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.29■□□□□ 0.36
HNF4AP41235 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.29■□□□□ 0.36
HNF4AP41235 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.29■□□□□ 0.36
HNF4AP41235 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms