Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.04■□□□□ 0.32
MSX2P35548 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
MSX2P35548 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSX2P35548 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
MSX2P35548 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
MSX2P35548 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSX2P35548 AC060834.1-201ENST00000443027 2032 ntBASIC17.04■□□□□ 0.32
MSX2P35548 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSX2P35548 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSX2P35548 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.04■□□□□ 0.32
MSX2P35548 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.03■□□□□ 0.32
MSX2P35548 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
MSX2P35548 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSX2P35548 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSX2P35548 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSX2P35548 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
MSX2P35548 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSX2P35548 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSX2P35548 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
MSX2P35548 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSX2P35548 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSX2P35548 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSX2P35548 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSX2P35548 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
MSX2P35548 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSX2P35548 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC17.03■□□□□ 0.32
MSX2P35548 RNA5SP413-201ENST00000516373 109 ntBASIC17.03■□□□□ 0.32
MSX2P35548 KLF13-207ENST00000560473 489 ntTSL 3 BASIC17.03■□□□□ 0.32
MSX2P35548 MIR3180-5-201ENST00000583743 153 ntBASIC17.03■□□□□ 0.32
MSX2P35548 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
MSX2P35548 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
MSX2P35548 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSX2P35548 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSX2P35548 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
MSX2P35548 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
MSX2P35548 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
MSX2P35548 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
MSX2P35548 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSX2P35548 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSX2P35548 DOC2GP-204ENST00000639052 2548 ntBASIC17.03■□□□□ 0.32
MSX2P35548 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSX2P35548 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
MSX2P35548 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSX2P35548 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.03■□□□□ 0.32
MSX2P35548 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
MSX2P35548 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
MSX2P35548 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
MSX2P35548 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.02■□□□□ 0.32
MSX2P35548 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.02■□□□□ 0.32
MSX2P35548 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSX2P35548 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSX2P35548 AC011270.2-201ENST00000624293 2550 ntBASIC17.02■□□□□ 0.32
MSX2P35548 AL162727.3-201ENST00000635661 2787 ntBASIC17.02■□□□□ 0.32
MSX2P35548 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
MSX2P35548 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSX2P35548 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
MSX2P35548 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.02■□□□□ 0.32
MSX2P35548 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
MSX2P35548 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.32
MSX2P35548 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.32
MSX2P35548 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
MSX2P35548 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.02■□□□□ 0.32
MSX2P35548 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSX2P35548 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
MSX2P35548 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.02■□□□□ 0.32
MSX2P35548 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSX2P35548 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSX2P35548 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.02■□□□□ 0.32
MSX2P35548 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.02■□□□□ 0.32
MSX2P35548 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSX2P35548 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.02■□□□□ 0.32
MSX2P35548 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
MSX2P35548 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
MSX2P35548 AC133681.1-201ENST00000465482 601 ntBASIC17.02■□□□□ 0.32
MSX2P35548 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSX2P35548 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
MSX2P35548 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
MSX2P35548 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
MSX2P35548 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
MSX2P35548 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.31
MSX2P35548 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
MSX2P35548 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.31
MSX2P35548 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
MSX2P35548 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.02■□□□□ 0.31
MSX2P35548 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.02■□□□□ 0.31
MSX2P35548 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
MSX2P35548 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
MSX2P35548 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.02■□□□□ 0.31
MSX2P35548 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
MSX2P35548 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX2P35548 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.01■□□□□ 0.31
MSX2P35548 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX2P35548 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX2P35548 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MSX2P35548 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
MSX2P35548 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX2P35548 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MSX2P35548 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.01■□□□□ 0.31
MSX2P35548 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX2P35548 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms