Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH3P22223 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.47■□□□□ 0.39
CDH3P22223 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH3P22223 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH3P22223 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CDH3P22223 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC17.47■□□□□ 0.39
CDH3P22223 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.47■□□□□ 0.39
CDH3P22223 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CDH3P22223 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC17.47■□□□□ 0.39
CDH3P22223 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH3P22223 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.47■□□□□ 0.39
CDH3P22223 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
CDH3P22223 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH3P22223 AC012313.10-201ENST00000623509 926 ntBASIC17.47■□□□□ 0.39
CDH3P22223 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CDH3P22223 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CDH3P22223 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH3P22223 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.47■□□□□ 0.39
CDH3P22223 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.47■□□□□ 0.39
CDH3P22223 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.47■□□□□ 0.39
CDH3P22223 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH3P22223 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH3P22223 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.47■□□□□ 0.39
CDH3P22223 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CDH3P22223 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.47■□□□□ 0.39
CDH3P22223 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH3P22223 LINC01126-201ENST00000623515 1646 ntBASIC17.47■□□□□ 0.39
CDH3P22223 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CDH3P22223 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.46■□□□□ 0.39
CDH3P22223 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.46■□□□□ 0.39
CDH3P22223 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CDH3P22223 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH3P22223 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH3P22223 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.46■□□□□ 0.39
CDH3P22223 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.46■□□□□ 0.39
CDH3P22223 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
CDH3P22223 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CDH3P22223 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
CDH3P22223 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
CDH3P22223 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH3P22223 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CDH3P22223 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CDH3P22223 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH3P22223 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.46■□□□□ 0.39
CDH3P22223 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
CDH3P22223 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CDH3P22223 TSPY12P-201ENST00000421279 868 ntBASIC17.46■□□□□ 0.39
CDH3P22223 DUSP5P1-201ENST00000441325 1139 ntBASIC17.46■□□□□ 0.39
CDH3P22223 VENTXP7-201ENST00000475503 772 ntBASIC17.46■□□□□ 0.39
CDH3P22223 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC17.46■□□□□ 0.39
CDH3P22223 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC17.46■□□□□ 0.39
CDH3P22223 MPI-205ENST00000562606 1052 ntTSL 3 BASIC17.46■□□□□ 0.39
CDH3P22223 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC17.46■□□□□ 0.39
CDH3P22223 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH3P22223 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH3P22223 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.46■□□□□ 0.39
CDH3P22223 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC17.46■□□□□ 0.39
CDH3P22223 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH3P22223 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH3P22223 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH3P22223 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
CDH3P22223 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH3P22223 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CDH3P22223 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.46■□□□□ 0.39
CDH3P22223 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC17.46■□□□□ 0.38
CDH3P22223 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.45■□□□□ 0.38
CDH3P22223 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH3P22223 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH3P22223 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
CDH3P22223 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH3P22223 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH3P22223 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH3P22223 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
CDH3P22223 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.45■□□□□ 0.38
CDH3P22223 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH3P22223 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH3P22223 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH3P22223 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH3P22223 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.45■□□□□ 0.38
CDH3P22223 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH3P22223 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CDH3P22223 KRT126P-201ENST00000549467 1181 ntBASIC17.45■□□□□ 0.38
CDH3P22223 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH3P22223 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC17.45■□□□□ 0.38
CDH3P22223 Z69720.1-201ENST00000601483 472 ntBASIC17.45■□□□□ 0.38
CDH3P22223 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH3P22223 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.45■□□□□ 0.38
CDH3P22223 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC17.45■□□□□ 0.38
CDH3P22223 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH3P22223 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.45■□□□□ 0.38
CDH3P22223 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH3P22223 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH3P22223 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CDH3P22223 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.44■□□□□ 0.38
CDH3P22223 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH3P22223 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
CDH3P22223 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.44■□□□□ 0.38
CDH3P22223 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH3P22223 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH3P22223 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms