Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VIMP08670 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.93■□□□□ 0.46
VIMP08670 STK24-203ENST00000397517 4578 ntTSL 2 BASIC17.93■□□□□ 0.46
VIMP08670 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
VIMP08670 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC17.93■□□□□ 0.46
VIMP08670 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VIMP08670 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
VIMP08670 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VIMP08670 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC17.93■□□□□ 0.46
VIMP08670 RHEB-204ENST00000472642 900 ntTSL 3 BASIC17.93■□□□□ 0.46
VIMP08670 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC17.93■□□□□ 0.46
VIMP08670 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC17.93■□□□□ 0.46
VIMP08670 OAS3-207ENST00000551007 998 ntTSL 2 BASIC17.93■□□□□ 0.46
VIMP08670 VPS53-216ENST00000574029 585 ntTSL 4 BASIC17.93■□□□□ 0.46
VIMP08670 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.93■□□□□ 0.46
VIMP08670 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VIMP08670 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC17.93■□□□□ 0.46
VIMP08670 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VIMP08670 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VIMP08670 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
VIMP08670 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
VIMP08670 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
VIMP08670 LINC01126-201ENST00000623515 1646 ntBASIC17.93■□□□□ 0.46
VIMP08670 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
VIMP08670 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VIMP08670 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VIMP08670 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.93■□□□□ 0.46
VIMP08670 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VIMP08670 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VIMP08670 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VIMP08670 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC17.92■□□□□ 0.46
VIMP08670 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
VIMP08670 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
VIMP08670 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VIMP08670 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
VIMP08670 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VIMP08670 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
VIMP08670 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
VIMP08670 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
VIMP08670 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VIMP08670 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
VIMP08670 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VIMP08670 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
VIMP08670 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC17.92■□□□□ 0.46
VIMP08670 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
VIMP08670 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VIMP08670 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.92■□□□□ 0.46
VIMP08670 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.92■□□□□ 0.46
VIMP08670 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.92■□□□□ 0.46
VIMP08670 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.92■□□□□ 0.46
VIMP08670 AC097658.1-201ENST00000475555 843 ntBASIC17.92■□□□□ 0.46
VIMP08670 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.92■□□□□ 0.46
VIMP08670 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
VIMP08670 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
VIMP08670 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.92■□□□□ 0.46
VIMP08670 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
VIMP08670 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.92■□□□□ 0.46
VIMP08670 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VIMP08670 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VIMP08670 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.92■□□□□ 0.46
VIMP08670 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VIMP08670 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
VIMP08670 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VIMP08670 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.92■□□□□ 0.46
VIMP08670 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
VIMP08670 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
VIMP08670 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.92■□□□□ 0.46
VIMP08670 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.92■□□□□ 0.46
VIMP08670 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
VIMP08670 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VIMP08670 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
VIMP08670 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VIMP08670 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VIMP08670 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VIMP08670 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
VIMP08670 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
VIMP08670 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VIMP08670 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VIMP08670 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.91■□□□□ 0.46
VIMP08670 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.91■□□□□ 0.46
VIMP08670 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
VIMP08670 AC131212.4-201ENST00000623606 975 ntBASIC17.91■□□□□ 0.46
VIMP08670 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VIMP08670 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VIMP08670 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
VIMP08670 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.91■□□□□ 0.46
VIMP08670 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VIMP08670 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VIMP08670 AL163051.1-201ENST00000569214 1512 ntBASIC17.91■□□□□ 0.46
VIMP08670 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
VIMP08670 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.91■□□□□ 0.46
VIMP08670 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
VIMP08670 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VIMP08670 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
VIMP08670 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
VIMP08670 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
VIMP08670 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
VIMP08670 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VIMP08670 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
VIMP08670 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms