Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.8■□□□□ 0.44
COL4A2P08572 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A2P08572 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A2P08572 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A2P08572 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A2P08572 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A2P08572 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
COL4A2P08572 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A2P08572 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A2P08572 AC004461.1-201ENST00000412461 403 ntBASIC17.8■□□□□ 0.44
COL4A2P08572 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A2P08572 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A2P08572 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A2P08572 AC023141.5-201ENST00000458585 616 ntBASIC17.8■□□□□ 0.44
COL4A2P08572 AC109322.1-201ENST00000524499 1264 ntBASIC17.8■□□□□ 0.44
COL4A2P08572 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
COL4A2P08572 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.8■□□□□ 0.44
COL4A2P08572 LSM12-202ENST00000585388 942 ntTSL 3 BASIC17.8■□□□□ 0.44
COL4A2P08572 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A2P08572 AC093677.2-201ENST00000600169 1863 ntBASIC17.8■□□□□ 0.44
COL4A2P08572 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC17.8■□□□□ 0.44
COL4A2P08572 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A2P08572 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
COL4A2P08572 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A2P08572 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A2P08572 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A2P08572 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.79■□□□□ 0.44
COL4A2P08572 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A2P08572 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A2P08572 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC17.79■□□□□ 0.44
COL4A2P08572 FAM8A3P-201ENST00000427218 844 ntBASIC17.79■□□□□ 0.44
COL4A2P08572 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC17.79■□□□□ 0.44
COL4A2P08572 AC087163.2-201ENST00000457299 853 ntBASIC17.79■□□□□ 0.44
COL4A2P08572 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC17.79■□□□□ 0.44
COL4A2P08572 SMN2-210ENST00000511812 867 ntTSL 2 BASIC17.79■□□□□ 0.44
COL4A2P08572 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC17.79■□□□□ 0.44
COL4A2P08572 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
COL4A2P08572 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A2P08572 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.79■□□□□ 0.44
COL4A2P08572 AC009093.7-201ENST00000623853 1223 ntBASIC17.79■□□□□ 0.44
COL4A2P08572 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A2P08572 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
COL4A2P08572 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A2P08572 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A2P08572 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A2P08572 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A2P08572 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A2P08572 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A2P08572 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.78■□□□□ 0.44
COL4A2P08572 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A2P08572 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.78■□□□□ 0.44
COL4A2P08572 MIR770-201ENST00000390219 98 ntBASIC17.78■□□□□ 0.44
COL4A2P08572 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.78■□□□□ 0.44
COL4A2P08572 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC17.78■□□□□ 0.44
COL4A2P08572 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC17.78■□□□□ 0.44
COL4A2P08572 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.78■□□□□ 0.44
COL4A2P08572 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A2P08572 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A2P08572 AC005498.2-205ENST00000593218 784 ntBASIC17.78■□□□□ 0.44
COL4A2P08572 AC099522.2-201ENST00000607001 744 ntBASIC17.78■□□□□ 0.44
COL4A2P08572 CYP51A1P2-201ENST00000419457 1499 ntBASIC17.78■□□□□ 0.44
COL4A2P08572 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A2P08572 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
COL4A2P08572 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A2P08572 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A2P08572 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A2P08572 AC097637.2-201ENST00000624096 1997 ntBASIC17.78■□□□□ 0.44
COL4A2P08572 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A2P08572 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A2P08572 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.78■□□□□ 0.44
COL4A2P08572 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
COL4A2P08572 AC006116.8-202ENST00000587620 1550 ntBASIC17.78■□□□□ 0.44
COL4A2P08572 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A2P08572 LINC00982-205ENST00000420957 435 ntBASIC17.78■□□□□ 0.44
COL4A2P08572 AC002558.1-201ENST00000488906 803 ntBASIC17.78■□□□□ 0.44
COL4A2P08572 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A2P08572 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
COL4A2P08572 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC17.78■□□□□ 0.44
COL4A2P08572 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A2P08572 AC092919.2-201ENST00000623631 1645 ntBASIC17.78■□□□□ 0.44
COL4A2P08572 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A2P08572 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A2P08572 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.77■□□□□ 0.44
COL4A2P08572 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A2P08572 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A2P08572 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A2P08572 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC17.77■□□□□ 0.44
COL4A2P08572 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A2P08572 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC17.77■□□□□ 0.44
COL4A2P08572 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.77■□□□□ 0.44
COL4A2P08572 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.77■□□□□ 0.44
COL4A2P08572 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC17.77■□□□□ 0.43
COL4A2P08572 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.77■□□□□ 0.43
COL4A2P08572 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.77■□□□□ 0.43
COL4A2P08572 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
COL4A2P08572 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
COL4A2P08572 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.77■□□□□ 0.43
COL4A2P08572 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL4A2P08572 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A2P08572 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms