Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 REXO1L6P-202ENST00000619970 1078 ntBASIC18.77■□□□□ 0.6
RTN3O95197 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18.77■□□□□ 0.6
RTN3O95197 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
RTN3O95197 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
RTN3O95197 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
RTN3O95197 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.59
RTN3O95197 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
RTN3O95197 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
RTN3O95197 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN3O95197 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN3O95197 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RTN3O95197 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.76■□□□□ 0.59
RTN3O95197 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RTN3O95197 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN3O95197 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN3O95197 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.76■□□□□ 0.59
RTN3O95197 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.76■□□□□ 0.59
RTN3O95197 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RTN3O95197 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC18.76■□□□□ 0.59
RTN3O95197 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RTN3O95197 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN3O95197 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN3O95197 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN3O95197 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.76■□□□□ 0.59
RTN3O95197 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN3O95197 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN3O95197 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN3O95197 AC026396.1-201ENST00000419388 421 ntBASIC18.76■□□□□ 0.59
RTN3O95197 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC18.76■□□□□ 0.59
RTN3O95197 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.76■□□□□ 0.59
RTN3O95197 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC18.76■□□□□ 0.59
RTN3O95197 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN3O95197 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN3O95197 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC18.76■□□□□ 0.59
RTN3O95197 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN3O95197 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN3O95197 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN3O95197 INTS4P1-201ENST00000438455 1935 ntBASIC18.76■□□□□ 0.59
RTN3O95197 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.76■□□□□ 0.59
RTN3O95197 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN3O95197 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
RTN3O95197 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RTN3O95197 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RTN3O95197 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.75■□□□□ 0.59
RTN3O95197 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.75■□□□□ 0.59
RTN3O95197 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.75■□□□□ 0.59
RTN3O95197 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RTN3O95197 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RTN3O95197 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC18.75■□□□□ 0.59
RTN3O95197 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC18.75■□□□□ 0.59
RTN3O95197 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC18.75■□□□□ 0.59
RTN3O95197 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RTN3O95197 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RTN3O95197 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.75■□□□□ 0.59
RTN3O95197 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.75■□□□□ 0.59
RTN3O95197 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.75■□□□□ 0.59
RTN3O95197 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RTN3O95197 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
RTN3O95197 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RTN3O95197 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RTN3O95197 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RTN3O95197 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RTN3O95197 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RTN3O95197 AC096633.1-201ENST00000422446 749 ntBASIC18.75■□□□□ 0.59
RTN3O95197 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.75■□□□□ 0.59
RTN3O95197 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
RTN3O95197 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC18.75■□□□□ 0.59
RTN3O95197 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RTN3O95197 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RTN3O95197 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.75■□□□□ 0.59
RTN3O95197 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC18.75■□□□□ 0.59
RTN3O95197 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RTN3O95197 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RTN3O95197 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
RTN3O95197 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.75■□□□□ 0.59
RTN3O95197 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
RTN3O95197 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
RTN3O95197 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RTN3O95197 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RTN3O95197 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC18.75■□□□□ 0.59
RTN3O95197 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RTN3O95197 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RTN3O95197 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.75■□□□□ 0.59
RTN3O95197 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
RTN3O95197 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.74■□□□□ 0.59
RTN3O95197 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RTN3O95197 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
RTN3O95197 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RTN3O95197 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
RTN3O95197 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.74■□□□□ 0.59
RTN3O95197 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
RTN3O95197 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RTN3O95197 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RTN3O95197 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.74■□□□□ 0.59
RTN3O95197 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
RTN3O95197 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
RTN3O95197 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC18.74■□□□□ 0.59
RTN3O95197 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
RTN3O95197 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RTN3O95197 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms