Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SEMA3DO95025 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SEMA3DO95025 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SEMA3DO95025 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SEMA3DO95025 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SEMA3DO95025 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SEMA3DO95025 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SEMA3DO95025 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SEMA3DO95025 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
SEMA3DO95025 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SEMA3DO95025 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SEMA3DO95025 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SEMA3DO95025 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SEMA3DO95025 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SEMA3DO95025 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SEMA3DO95025 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SEMA3DO95025 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SEMA3DO95025 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SEMA3DO95025 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SEMA3DO95025 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SEMA3DO95025 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.1■□□□□ 0.33
SEMA3DO95025 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC17.1■□□□□ 0.33
SEMA3DO95025 SPDYE13P-201ENST00000445314 798 ntBASIC17.1■□□□□ 0.33
SEMA3DO95025 AL671277.2-201ENST00000458060 996 ntBASIC17.1■□□□□ 0.33
SEMA3DO95025 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.1■□□□□ 0.33
SEMA3DO95025 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SEMA3DO95025 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SEMA3DO95025 AL390719.2-201ENST00000606993 987 ntBASIC17.1■□□□□ 0.33
SEMA3DO95025 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.1■□□□□ 0.33
SEMA3DO95025 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SEMA3DO95025 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SEMA3DO95025 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SEMA3DO95025 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
SEMA3DO95025 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.1■□□□□ 0.33
SEMA3DO95025 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SEMA3DO95025 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SEMA3DO95025 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SEMA3DO95025 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SEMA3DO95025 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.1■□□□□ 0.33
SEMA3DO95025 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.1■□□□□ 0.33
SEMA3DO95025 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SEMA3DO95025 PKD1P1-201ENST00000458669 6805 ntBASIC17.1■□□□□ 0.33
SEMA3DO95025 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SEMA3DO95025 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SEMA3DO95025 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SEMA3DO95025 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
SEMA3DO95025 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SEMA3DO95025 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.09■□□□□ 0.33
SEMA3DO95025 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.09■□□□□ 0.33
SEMA3DO95025 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.09■□□□□ 0.33
SEMA3DO95025 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SEMA3DO95025 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.09■□□□□ 0.33
SEMA3DO95025 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.09■□□□□ 0.33
SEMA3DO95025 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.09■□□□□ 0.33
SEMA3DO95025 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.09■□□□□ 0.33
SEMA3DO95025 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.09■□□□□ 0.33
SEMA3DO95025 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
SEMA3DO95025 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SEMA3DO95025 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SEMA3DO95025 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SEMA3DO95025 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SEMA3DO95025 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.09■□□□□ 0.33
SEMA3DO95025 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.09■□□□□ 0.33
SEMA3DO95025 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SEMA3DO95025 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SEMA3DO95025 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SEMA3DO95025 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SEMA3DO95025 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SEMA3DO95025 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SEMA3DO95025 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.09■□□□□ 0.33
SEMA3DO95025 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SEMA3DO95025 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SEMA3DO95025 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
SEMA3DO95025 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.08■□□□□ 0.33
SEMA3DO95025 FER1L4-210ENST00000615531 5998 ntBASIC17.08■□□□□ 0.33
SEMA3DO95025 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
SEMA3DO95025 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SEMA3DO95025 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
SEMA3DO95025 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.08■□□□□ 0.33
SEMA3DO95025 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
SEMA3DO95025 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.08■□□□□ 0.33
SEMA3DO95025 AC012317.2-201ENST00000623305 2251 ntBASIC17.08■□□□□ 0.33
SEMA3DO95025 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SEMA3DO95025 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.08■□□□□ 0.32
SEMA3DO95025 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SEMA3DO95025 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SEMA3DO95025 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
SEMA3DO95025 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SEMA3DO95025 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.08■□□□□ 0.32
SEMA3DO95025 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.08■□□□□ 0.32
SEMA3DO95025 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
SEMA3DO95025 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.08■□□□□ 0.32
SEMA3DO95025 DDX43P3-201ENST00000441064 443 ntBASIC17.08■□□□□ 0.32
SEMA3DO95025 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SEMA3DO95025 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
SEMA3DO95025 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.08■□□□□ 0.32
SEMA3DO95025 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.08■□□□□ 0.32
SEMA3DO95025 AC005332.3-201ENST00000589904 676 ntBASIC17.08■□□□□ 0.32
SEMA3DO95025 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.08■□□□□ 0.32
SEMA3DO95025 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms