Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.55■□□□□ 0.72
CCDC85CA6NKD9 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC85CA6NKD9 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC85CA6NKD9 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC85CA6NKD9 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC85CA6NKD9 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC85CA6NKD9 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CCDC85CA6NKD9 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC85CA6NKD9 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
CCDC85CA6NKD9 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC85CA6NKD9 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC85CA6NKD9 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC19.55■□□□□ 0.72
CCDC85CA6NKD9 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC19.55■□□□□ 0.72
CCDC85CA6NKD9 AC103810.3-201ENST00000583567 96 ntBASIC19.55■□□□□ 0.72
CCDC85CA6NKD9 APOC4-201ENST00000591600 348 ntTSL 3 BASIC19.55■□□□□ 0.72
CCDC85CA6NKD9 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
CCDC85CA6NKD9 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
CCDC85CA6NKD9 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC85CA6NKD9 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC19.55■□□□□ 0.72
CCDC85CA6NKD9 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC85CA6NKD9 SIRPAP1-201ENST00000448467 1770 ntBASIC19.55■□□□□ 0.72
CCDC85CA6NKD9 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC85CA6NKD9 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC85CA6NKD9 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CCDC85CA6NKD9 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC85CA6NKD9 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC85CA6NKD9 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC85CA6NKD9 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC85CA6NKD9 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC85CA6NKD9 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC85CA6NKD9 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC85CA6NKD9 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC85CA6NKD9 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC85CA6NKD9 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC19.54■□□□□ 0.72
CCDC85CA6NKD9 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC85CA6NKD9 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC19.54■□□□□ 0.72
CCDC85CA6NKD9 RARRES2P8-201ENST00000566335 367 ntBASIC19.54■□□□□ 0.72
CCDC85CA6NKD9 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC19.54■□□□□ 0.72
CCDC85CA6NKD9 MIR4453-201ENST00000584019 89 ntBASIC19.54■□□□□ 0.72
CCDC85CA6NKD9 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC85CA6NKD9 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
CCDC85CA6NKD9 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC85CA6NKD9 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC85CA6NKD9 AKAP8P1-201ENST00000434743 1349 ntBASIC19.53■□□□□ 0.72
CCDC85CA6NKD9 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC85CA6NKD9 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC85CA6NKD9 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC85CA6NKD9 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
CCDC85CA6NKD9 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC85CA6NKD9 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC85CA6NKD9 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC85CA6NKD9 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC85CA6NKD9 AC096633.1-201ENST00000422446 749 ntBASIC19.53■□□□□ 0.72
CCDC85CA6NKD9 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC19.53■□□□□ 0.72
CCDC85CA6NKD9 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC19.53■□□□□ 0.72
CCDC85CA6NKD9 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC85CA6NKD9 MIR6869-201ENST00000619434 62 ntBASIC19.53■□□□□ 0.72
CCDC85CA6NKD9 AL109936.8-201ENST00000641772 604 ntBASIC19.53■□□□□ 0.72
CCDC85CA6NKD9 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC85CA6NKD9 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC85CA6NKD9 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC85CA6NKD9 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC85CA6NKD9 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC85CA6NKD9 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 AC140658.5-201ENST00000438532 169 ntBASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 AC234783.1-201ENST00000441761 496 ntBASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 AC119751.2-201ENST00000504529 210 ntBASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 GATD1-206ENST00000526325 756 ntTSL 5 BASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 AC244093.1-201ENST00000610837 814 ntBASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 ACTL9-202ENST00000612068 1252 ntBASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.52■□□□□ 0.72
CCDC85CA6NKD9 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
CCDC85CA6NKD9 AC097637.2-201ENST00000624096 1997 ntBASIC19.52■□□□□ 0.71
CCDC85CA6NKD9 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.52■□□□□ 0.71
CCDC85CA6NKD9 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC85CA6NKD9 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms