Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 SOD2-201ENST00000337404 991 ntTSL 2 BASIC19.17■□□□□ 0.66
CNTN3Q9P232 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC19.17■□□□□ 0.66
CNTN3Q9P232 MRPL3P1-201ENST00000400109 1033 ntBASIC19.17■□□□□ 0.66
CNTN3Q9P232 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CNTN3Q9P232 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC19.17■□□□□ 0.66
CNTN3Q9P232 DDX43P3-201ENST00000441064 443 ntBASIC19.17■□□□□ 0.66
CNTN3Q9P232 PPIE-208ENST00000470213 927 ntTSL 3 BASIC19.17■□□□□ 0.66
CNTN3Q9P232 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC19.17■□□□□ 0.66
CNTN3Q9P232 AL662844.1-201ENST00000546340 181 ntBASIC19.17■□□□□ 0.66
CNTN3Q9P232 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC19.17■□□□□ 0.66
CNTN3Q9P232 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
CNTN3Q9P232 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC19.17■□□□□ 0.66
CNTN3Q9P232 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC19.17■□□□□ 0.66
CNTN3Q9P232 AC005332.8-201ENST00000622750 2735 ntBASIC19.17■□□□□ 0.66
CNTN3Q9P232 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CNTN3Q9P232 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC19.17■□□□□ 0.66
CNTN3Q9P232 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CNTN3Q9P232 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CNTN3Q9P232 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
CNTN3Q9P232 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CNTN3Q9P232 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC19.17■□□□□ 0.66
CNTN3Q9P232 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CNTN3Q9P232 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC19.17■□□□□ 0.66
CNTN3Q9P232 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC19.17■□□□□ 0.66
CNTN3Q9P232 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CNTN3Q9P232 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CNTN3Q9P232 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CNTN3Q9P232 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC19.16■□□□□ 0.66
CNTN3Q9P232 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CNTN3Q9P232 AC138028.4-201ENST00000564984 1845 ntBASIC19.16■□□□□ 0.66
CNTN3Q9P232 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
CNTN3Q9P232 AC009949.1-201ENST00000623048 1830 ntBASIC19.16■□□□□ 0.66
CNTN3Q9P232 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CNTN3Q9P232 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC19.16■□□□□ 0.66
CNTN3Q9P232 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
CNTN3Q9P232 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.16■□□□□ 0.66
CNTN3Q9P232 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.16■□□□□ 0.66
CNTN3Q9P232 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.16■□□□□ 0.66
CNTN3Q9P232 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CNTN3Q9P232 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC19.16■□□□□ 0.66
CNTN3Q9P232 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CNTN3Q9P232 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CNTN3Q9P232 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CNTN3Q9P232 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CNTN3Q9P232 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
CNTN3Q9P232 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CNTN3Q9P232 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC19.16■□□□□ 0.66
CNTN3Q9P232 SRP19-202ENST00000445150 833 ntTSL 2 BASIC19.16■□□□□ 0.66
CNTN3Q9P232 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CNTN3Q9P232 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC19.16■□□□□ 0.66
CNTN3Q9P232 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC19.16■□□□□ 0.66
CNTN3Q9P232 AD001527.2-201ENST00000622994 785 ntBASIC19.16■□□□□ 0.66
CNTN3Q9P232 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CNTN3Q9P232 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
CNTN3Q9P232 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CNTN3Q9P232 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.16■□□□□ 0.66
CNTN3Q9P232 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
CNTN3Q9P232 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CNTN3Q9P232 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC19.16■□□□□ 0.66
CNTN3Q9P232 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
CNTN3Q9P232 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19.16■□□□□ 0.66
CNTN3Q9P232 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CNTN3Q9P232 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
CNTN3Q9P232 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC19.15■□□□□ 0.66
CNTN3Q9P232 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC19.15■□□□□ 0.66
CNTN3Q9P232 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CNTN3Q9P232 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CNTN3Q9P232 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CNTN3Q9P232 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CNTN3Q9P232 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CNTN3Q9P232 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
CNTN3Q9P232 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC19.15■□□□□ 0.66
CNTN3Q9P232 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC19.15■□□□□ 0.66
CNTN3Q9P232 FAM197Y8-203ENST00000450145 560 ntBASIC19.15■□□□□ 0.66
CNTN3Q9P232 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC19.15■□□□□ 0.66
CNTN3Q9P232 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC19.15■□□□□ 0.66
CNTN3Q9P232 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CNTN3Q9P232 MNT-208ENST00000575394 606 ntTSL 4 BASIC19.15■□□□□ 0.66
CNTN3Q9P232 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC19.15■□□□□ 0.66
CNTN3Q9P232 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
CNTN3Q9P232 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
CNTN3Q9P232 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CNTN3Q9P232 AL354751.1-201ENST00000412768 1863 ntBASIC19.15■□□□□ 0.66
CNTN3Q9P232 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CNTN3Q9P232 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CNTN3Q9P232 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CNTN3Q9P232 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC19.15■□□□□ 0.66
CNTN3Q9P232 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CNTN3Q9P232 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.15■□□□□ 0.66
CNTN3Q9P232 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CNTN3Q9P232 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC19.15■□□□□ 0.66
CNTN3Q9P232 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.15■□□□□ 0.66
CNTN3Q9P232 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CNTN3Q9P232 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC19.14■□□□□ 0.66
CNTN3Q9P232 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.14■□□□□ 0.66
CNTN3Q9P232 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
CNTN3Q9P232 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CNTN3Q9P232 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CNTN3Q9P232 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CNTN3Q9P232 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms