Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 NOC2LP1-202ENST00000452600 2235 ntBASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 TEX30-205ENST00000376029 959 ntTSL 2 BASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 AC018712.1-201ENST00000455767 687 ntBASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 AP001005.1-201ENST00000571755 1248 ntBASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 AC073592.3-201ENST00000625118 1834 ntBASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC19.53■□□□□ 0.72
TRAIPQ9BWF2 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC19.52■□□□□ 0.72
TRAIPQ9BWF2 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRAIPQ9BWF2 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRAIPQ9BWF2 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TRAIPQ9BWF2 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRAIPQ9BWF2 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
TRAIPQ9BWF2 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TRAIPQ9BWF2 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRAIPQ9BWF2 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC19.52■□□□□ 0.72
TRAIPQ9BWF2 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRAIPQ9BWF2 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
TRAIPQ9BWF2 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC19.52■□□□□ 0.72
TRAIPQ9BWF2 RBSN-204ENST00000449050 903 ntTSL 2 BASIC19.52■□□□□ 0.72
TRAIPQ9BWF2 AF186996.4-201ENST00000467186 377 ntBASIC19.52■□□□□ 0.72
TRAIPQ9BWF2 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC19.52■□□□□ 0.72
TRAIPQ9BWF2 AP001269.4-201ENST00000609611 512 ntBASIC19.52■□□□□ 0.72
TRAIPQ9BWF2 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.52■□□□□ 0.72
TRAIPQ9BWF2 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRAIPQ9BWF2 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.52■□□□□ 0.72
TRAIPQ9BWF2 ESPNP-201ENST00000270691 2015 ntBASIC19.52■□□□□ 0.72
TRAIPQ9BWF2 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC19.52■□□□□ 0.72
TRAIPQ9BWF2 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC19.52■□□□□ 0.71
TRAIPQ9BWF2 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
TRAIPQ9BWF2 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
TRAIPQ9BWF2 AC005332.8-201ENST00000622750 2735 ntBASIC19.52■□□□□ 0.71
TRAIPQ9BWF2 AP005117.1-201ENST00000584346 1413 ntBASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 CD9-202ENST00000382515 1229 ntTSL 5 BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 ABCD1P5-201ENST00000445663 754 ntBASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 MOK-208ENST00000519058 917 ntTSL 2 BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAIPQ9BWF2 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC19.5■□□□□ 0.71
TRAIPQ9BWF2 TLE1-202ENST00000376484 666 ntTSL 3 BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms