Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
NUP88Q99567 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
NUP88Q99567 AC135050.7-201ENST00000624508 2218 ntBASIC20.86■□□□□ 0.93
NUP88Q99567 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
NUP88Q99567 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC20.86■□□□□ 0.93
NUP88Q99567 SP100-208ENST00000427101 1922 ntTSL 2 BASIC20.86■□□□□ 0.93
NUP88Q99567 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC20.86■□□□□ 0.93
NUP88Q99567 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NUP88Q99567 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NUP88Q99567 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.86■□□□□ 0.93
NUP88Q99567 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
NUP88Q99567 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NUP88Q99567 FUOM-202ENST00000368551 628 ntTSL 3 BASIC20.86■□□□□ 0.93
NUP88Q99567 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC20.86■□□□□ 0.93
NUP88Q99567 RNA5SP419-201ENST00000515908 135 ntBASIC20.86■□□□□ 0.93
NUP88Q99567 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC20.86■□□□□ 0.93
NUP88Q99567 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC20.86■□□□□ 0.93
NUP88Q99567 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC20.86■□□□□ 0.93
NUP88Q99567 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC20.86■□□□□ 0.93
NUP88Q99567 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
NUP88Q99567 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC20.86■□□□□ 0.93
NUP88Q99567 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC20.86■□□□□ 0.93
NUP88Q99567 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC20.86■□□□□ 0.93
NUP88Q99567 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
NUP88Q99567 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
NUP88Q99567 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC20.86■□□□□ 0.93
NUP88Q99567 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NUP88Q99567 AL390961.4-201ENST00000623958 2535 ntBASIC20.86■□□□□ 0.93
NUP88Q99567 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
NUP88Q99567 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
NUP88Q99567 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC20.86■□□□□ 0.93
NUP88Q99567 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
NUP88Q99567 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC20.86■□□□□ 0.93
NUP88Q99567 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NUP88Q99567 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
NUP88Q99567 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NUP88Q99567 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NUP88Q99567 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NUP88Q99567 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NUP88Q99567 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NUP88Q99567 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NUP88Q99567 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC20.85■□□□□ 0.93
NUP88Q99567 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NUP88Q99567 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC20.85■□□□□ 0.93
NUP88Q99567 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NUP88Q99567 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
NUP88Q99567 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
NUP88Q99567 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
NUP88Q99567 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NUP88Q99567 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC20.85■□□□□ 0.93
NUP88Q99567 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC20.85■□□□□ 0.93
NUP88Q99567 AR-207ENST00000612010 3896 ntTSL 5 BASIC20.85■□□□□ 0.93
NUP88Q99567 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NUP88Q99567 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NUP88Q99567 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
NUP88Q99567 AL022342.1-201ENST00000400363 863 ntBASIC20.85■□□□□ 0.93
NUP88Q99567 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC20.85■□□□□ 0.93
NUP88Q99567 AL662844.1-201ENST00000546340 181 ntBASIC20.85■□□□□ 0.93
NUP88Q99567 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC20.85■□□□□ 0.93
NUP88Q99567 GZMM-202ENST00000592501 941 ntTSL 3 BASIC20.85■□□□□ 0.93
NUP88Q99567 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC20.85■□□□□ 0.93
NUP88Q99567 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC20.85■□□□□ 0.93
NUP88Q99567 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC20.85■□□□□ 0.93
NUP88Q99567 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
NUP88Q99567 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
NUP88Q99567 AC018470.1-201ENST00000624790 3129 ntBASIC20.85■□□□□ 0.93
NUP88Q99567 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
NUP88Q99567 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC20.85■□□□□ 0.93
NUP88Q99567 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NUP88Q99567 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC20.85■□□□□ 0.93
NUP88Q99567 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NUP88Q99567 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NUP88Q99567 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC20.85■□□□□ 0.93
NUP88Q99567 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NUP88Q99567 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC20.85■□□□□ 0.93
NUP88Q99567 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
NUP88Q99567 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NUP88Q99567 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
NUP88Q99567 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
NUP88Q99567 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NUP88Q99567 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
NUP88Q99567 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
NUP88Q99567 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
NUP88Q99567 FGFR3P6-201ENST00000457012 610 ntBASIC20.84■□□□□ 0.93
NUP88Q99567 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC20.84■□□□□ 0.93
NUP88Q99567 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC20.84■□□□□ 0.93
NUP88Q99567 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC20.84■□□□□ 0.93
NUP88Q99567 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC20.84■□□□□ 0.93
NUP88Q99567 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC20.84■□□□□ 0.93
NUP88Q99567 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC20.84■□□□□ 0.93
NUP88Q99567 AL355877.3-201ENST00000622820 899 ntBASIC20.84■□□□□ 0.93
NUP88Q99567 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC20.84■□□□□ 0.93
NUP88Q99567 AC093010.1-201ENST00000473625 1624 ntBASIC20.84■□□□□ 0.93
NUP88Q99567 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NUP88Q99567 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NUP88Q99567 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
NUP88Q99567 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC20.84■□□□□ 0.93
NUP88Q99567 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
NUP88Q99567 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
NUP88Q99567 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms