Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC20.41■□□□□ 0.86
USP28Q96RU2 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP28Q96RU2 HTR7P1-202ENST00000624664 4411 ntBASIC20.4■□□□□ 0.86
USP28Q96RU2 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
USP28Q96RU2 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
USP28Q96RU2 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
USP28Q96RU2 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
USP28Q96RU2 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
USP28Q96RU2 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USP28Q96RU2 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
USP28Q96RU2 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
USP28Q96RU2 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USP28Q96RU2 AL137013.1-201ENST00000432946 1228 ntBASIC20.4■□□□□ 0.86
USP28Q96RU2 DDX43P3-201ENST00000441064 443 ntBASIC20.4■□□□□ 0.86
USP28Q96RU2 BX664615.1-201ENST00000443558 458 ntBASIC20.4■□□□□ 0.86
USP28Q96RU2 KRT18P38-201ENST00000449496 1282 ntBASIC20.4■□□□□ 0.86
USP28Q96RU2 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC20.4■□□□□ 0.86
USP28Q96RU2 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
USP28Q96RU2 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC20.4■□□□□ 0.86
USP28Q96RU2 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC20.4■□□□□ 0.86
USP28Q96RU2 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC20.4■□□□□ 0.86
USP28Q96RU2 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC20.4■□□□□ 0.86
USP28Q96RU2 AC005363.2-201ENST00000618631 242 ntBASIC20.4■□□□□ 0.86
USP28Q96RU2 LITAF-220ENST00000620789 692 ntTSL 5 BASIC20.4■□□□□ 0.86
USP28Q96RU2 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USP28Q96RU2 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC20.4■□□□□ 0.86
USP28Q96RU2 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
USP28Q96RU2 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
USP28Q96RU2 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
USP28Q96RU2 TPR-209ENST00000613151 2478 ntTSL 5 BASIC20.39■□□□□ 0.86
USP28Q96RU2 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
USP28Q96RU2 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC20.39■□□□□ 0.86
USP28Q96RU2 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.86
USP28Q96RU2 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC20.39■□□□□ 0.86
USP28Q96RU2 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
USP28Q96RU2 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
USP28Q96RU2 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
USP28Q96RU2 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
USP28Q96RU2 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.86
USP28Q96RU2 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
USP28Q96RU2 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC20.39■□□□□ 0.85
USP28Q96RU2 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP28Q96RU2 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
USP28Q96RU2 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP28Q96RU2 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
USP28Q96RU2 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP28Q96RU2 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP28Q96RU2 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC20.39■□□□□ 0.85
USP28Q96RU2 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
USP28Q96RU2 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.39■□□□□ 0.85
USP28Q96RU2 AC009154.2-201ENST00000621177 724 ntBASIC20.39■□□□□ 0.85
USP28Q96RU2 AC073912.3-201ENST00000624414 853 ntBASIC20.39■□□□□ 0.85
USP28Q96RU2 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC20.39■□□□□ 0.85
USP28Q96RU2 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP28Q96RU2 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
USP28Q96RU2 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP28Q96RU2 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP28Q96RU2 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC20.39■□□□□ 0.85
USP28Q96RU2 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
USP28Q96RU2 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP28Q96RU2 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
USP28Q96RU2 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP28Q96RU2 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP28Q96RU2 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP28Q96RU2 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
USP28Q96RU2 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
USP28Q96RU2 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
USP28Q96RU2 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP28Q96RU2 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP28Q96RU2 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC20.38■□□□□ 0.85
USP28Q96RU2 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC20.38■□□□□ 0.85
USP28Q96RU2 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC20.38■□□□□ 0.85
USP28Q96RU2 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
USP28Q96RU2 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP28Q96RU2 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.38■□□□□ 0.85
USP28Q96RU2 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP28Q96RU2 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP28Q96RU2 AC005521.1-201ENST00000393351 872 ntBASIC20.38■□□□□ 0.85
USP28Q96RU2 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC20.38■□□□□ 0.85
USP28Q96RU2 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC20.38■□□□□ 0.85
USP28Q96RU2 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC20.38■□□□□ 0.85
USP28Q96RU2 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC20.38■□□□□ 0.85
USP28Q96RU2 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC20.38■□□□□ 0.85
USP28Q96RU2 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC20.38■□□□□ 0.85
USP28Q96RU2 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC20.38■□□□□ 0.85
USP28Q96RU2 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.38■□□□□ 0.85
USP28Q96RU2 LINC01451-201ENST00000623792 534 ntBASIC20.38■□□□□ 0.85
USP28Q96RU2 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP28Q96RU2 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP28Q96RU2 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
USP28Q96RU2 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC20.38■□□□□ 0.85
USP28Q96RU2 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
USP28Q96RU2 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
USP28Q96RU2 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
USP28Q96RU2 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP28Q96RU2 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC20.38■□□□□ 0.85
USP28Q96RU2 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP28Q96RU2 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP28Q96RU2 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP28Q96RU2 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms