Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
SHROOM3Q8TF72 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHROOM3Q8TF72 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHROOM3Q8TF72 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHROOM3Q8TF72 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHROOM3Q8TF72 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.18■□□□□ 0.5
SHROOM3Q8TF72 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHROOM3Q8TF72 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.18■□□□□ 0.5
SHROOM3Q8TF72 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.18■□□□□ 0.5
SHROOM3Q8TF72 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHROOM3Q8TF72 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 MPI-205ENST00000562606 1052 ntTSL 3 BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 AC011840.4-201ENST00000578471 627 ntBASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 GNAS-203ENST00000306120 1878 ntBASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 CIB2-208ENST00000560618 804 ntTSL 2 BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 AC005332.3-201ENST00000589904 676 ntBASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
SHROOM3Q8TF72 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHROOM3Q8TF72 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHROOM3Q8TF72 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.16■□□□□ 0.5
SHROOM3Q8TF72 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.16■□□□□ 0.5
SHROOM3Q8TF72 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHROOM3Q8TF72 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHROOM3Q8TF72 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.16■□□□□ 0.5
SHROOM3Q8TF72 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.16■□□□□ 0.5
SHROOM3Q8TF72 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHROOM3Q8TF72 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHROOM3Q8TF72 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18.16■□□□□ 0.5
SHROOM3Q8TF72 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHROOM3Q8TF72 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
SHROOM3Q8TF72 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.16■□□□□ 0.5
SHROOM3Q8TF72 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.16■□□□□ 0.5
SHROOM3Q8TF72 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC18.16■□□□□ 0.5
SHROOM3Q8TF72 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SHROOM3Q8TF72 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHROOM3Q8TF72 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.16■□□□□ 0.5
SHROOM3Q8TF72 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHROOM3Q8TF72 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHROOM3Q8TF72 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHROOM3Q8TF72 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
SHROOM3Q8TF72 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHROOM3Q8TF72 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 AC007967.3-201ENST00000434308 558 ntBASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 EMBP1-201ENST00000458200 901 ntBASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 FZD10-202ENST00000539839 3282 ntBASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 AC068472.1-201ENST00000474589 881 ntBASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 AC104819.1-201ENST00000504587 486 ntBASIC18.15■□□□□ 0.5
SHROOM3Q8TF72 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms