Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
ALMS1Q8TCU4 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
ALMS1Q8TCU4 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
ALMS1Q8TCU4 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
ALMS1Q8TCU4 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC11.92□□□□□ -0.5
ALMS1Q8TCU4 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
ALMS1Q8TCU4 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
ALMS1Q8TCU4 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC11.92□□□□□ -0.5
ALMS1Q8TCU4 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC11.92□□□□□ -0.5
ALMS1Q8TCU4 AC069335.1-201ENST00000489972 472 ntBASIC11.92□□□□□ -0.5
ALMS1Q8TCU4 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC11.92□□□□□ -0.5
ALMS1Q8TCU4 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC11.92□□□□□ -0.5
ALMS1Q8TCU4 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC11.92□□□□□ -0.5
ALMS1Q8TCU4 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC11.92□□□□□ -0.5
ALMS1Q8TCU4 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC11.92□□□□□ -0.5
ALMS1Q8TCU4 RNA5SP421-201ENST00000516864 134 ntBASIC11.92□□□□□ -0.5
ALMS1Q8TCU4 AC112191.1-201ENST00000523689 701 ntBASIC11.92□□□□□ -0.5
ALMS1Q8TCU4 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
ALMS1Q8TCU4 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC11.92□□□□□ -0.5
ALMS1Q8TCU4 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
ALMS1Q8TCU4 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
ALMS1Q8TCU4 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC11.92□□□□□ -0.5
ALMS1Q8TCU4 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
ALMS1Q8TCU4 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
ALMS1Q8TCU4 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 AL355306.1-201ENST00000415580 579 ntBASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 SPDYE14P-201ENST00000442619 822 ntBASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 GOLGA6L11P-201ENST00000417252 1298 ntBASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 NME2P1-201ENST00000426182 414 ntBASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 SPDYE11-202ENST00000450699 704 ntBASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 SPDYE9P-201ENST00000570642 692 ntBASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 SPDYE10P-202ENST00000612005 668 ntBASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 SPDYE8P-202ENST00000612377 668 ntBASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 MIR6752-201ENST00000618442 71 ntBASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 TSFM-210ENST00000550559 897 ntTSL 5 BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 COX5A-202ENST00000562233 441 ntTSL 3 BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 AP001059.3-201ENST00000619053 235 ntBASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC11.91□□□□□ -0.5
ALMS1Q8TCU4 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
ALMS1Q8TCU4 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
ALMS1Q8TCU4 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
ALMS1Q8TCU4 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
ALMS1Q8TCU4 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
ALMS1Q8TCU4 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC11.9□□□□□ -0.5
ALMS1Q8TCU4 HILS1-202ENST00000545329 423 ntBASIC11.9□□□□□ -0.5
ALMS1Q8TCU4 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
ALMS1Q8TCU4 RAB34-224ENST00000636513 888 ntTSL 5 BASIC11.9□□□□□ -0.5
ALMS1Q8TCU4 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC11.9□□□□□ -0.5
ALMS1Q8TCU4 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC11.9□□□□□ -0.5
ALMS1Q8TCU4 AC005082.1-201ENST00000413042 2259 ntBASIC11.9□□□□□ -0.5
ALMS1Q8TCU4 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC11.9□□□□□ -0.5
ALMS1Q8TCU4 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
ALMS1Q8TCU4 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
ALMS1Q8TCU4 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
ALMS1Q8TCU4 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
ALMS1Q8TCU4 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC11.9□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms