Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 RARRES2P6-201ENST00000567333 442 ntBASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 MYCNOS-205ENST00000641950 531 ntBASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC14.94□□□□□ -0.02
CCDC28AQ8IWP9 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 HACD1-201ENST00000326961 773 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 DBI-210ENST00000542275 757 ntTSL 5 BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 NME9-203ENST00000383180 2133 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CCDC28AQ8IWP9 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
CCDC28AQ8IWP9 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms