Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 CHCHD2P8-201ENST00000429873 447 ntBASIC21.56■■□□□ 1.04
VPS53Q5VIR6 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 AC091607.1-201ENST00000490318 1060 ntBASIC21.56■■□□□ 1.04
VPS53Q5VIR6 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 AC069148.1-201ENST00000608741 768 ntBASIC21.56■■□□□ 1.04
VPS53Q5VIR6 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
VPS53Q5VIR6 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 KRT18P65-201ENST00000439811 1286 ntBASIC21.55■■□□□ 1.04
VPS53Q5VIR6 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 DUTP2-201ENST00000519164 463 ntBASIC21.55■■□□□ 1.04
VPS53Q5VIR6 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 BCL10-202ENST00000620248 774 ntTSL 5 BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
VPS53Q5VIR6 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 MPI-205ENST00000562606 1052 ntTSL 3 BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 AP002414.4-201ENST00000589764 1148 ntBASIC21.54■■□□□ 1.04
VPS53Q5VIR6 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 AC009154.2-201ENST00000621177 724 ntBASIC21.54■■□□□ 1.04
VPS53Q5VIR6 AC124864.1-201ENST00000623408 392 ntBASIC21.54■■□□□ 1.04
VPS53Q5VIR6 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
VPS53Q5VIR6 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
VPS53Q5VIR6 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS53Q5VIR6 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS53Q5VIR6 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
VPS53Q5VIR6 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS53Q5VIR6 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC21.53■■□□□ 1.04
VPS53Q5VIR6 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VPS53Q5VIR6 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC21.53■■□□□ 1.04
VPS53Q5VIR6 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC21.53■■□□□ 1.04
VPS53Q5VIR6 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC21.53■■□□□ 1.04
VPS53Q5VIR6 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC21.53■■□□□ 1.04
VPS53Q5VIR6 AC092119.3-201ENST00000612618 583 ntBASIC21.53■■□□□ 1.04
VPS53Q5VIR6 IGHV3-41-201ENST00000613121 348 ntBASIC21.53■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms