Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP41Q3LFD5 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
USP41Q3LFD5 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP41Q3LFD5 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.94■□□□□ 0.62
USP41Q3LFD5 FABP5-202ENST00000396359 986 ntTSL 5 BASIC18.94■□□□□ 0.62
USP41Q3LFD5 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
USP41Q3LFD5 AC098831.1-202ENST00000438821 336 ntBASIC18.94■□□□□ 0.62
USP41Q3LFD5 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.94■□□□□ 0.62
USP41Q3LFD5 AC105339.3-201ENST00000560043 636 ntBASIC18.94■□□□□ 0.62
USP41Q3LFD5 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.94■□□□□ 0.62
USP41Q3LFD5 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
USP41Q3LFD5 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.94■□□□□ 0.62
USP41Q3LFD5 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP41Q3LFD5 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
USP41Q3LFD5 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
USP41Q3LFD5 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
USP41Q3LFD5 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
USP41Q3LFD5 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
USP41Q3LFD5 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
USP41Q3LFD5 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP41Q3LFD5 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USP41Q3LFD5 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.93■□□□□ 0.62
USP41Q3LFD5 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP41Q3LFD5 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP41Q3LFD5 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
USP41Q3LFD5 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP41Q3LFD5 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
USP41Q3LFD5 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
USP41Q3LFD5 AC103564.2-201ENST00000432853 1299 ntBASIC18.93■□□□□ 0.62
USP41Q3LFD5 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC18.93■□□□□ 0.62
USP41Q3LFD5 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
USP41Q3LFD5 RNF151-202ENST00000569210 853 ntTSL 2 BASIC18.93■□□□□ 0.62
USP41Q3LFD5 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP41Q3LFD5 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP41Q3LFD5 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC18.93■□□□□ 0.62
USP41Q3LFD5 AC139530.3-201ENST00000620344 690 ntBASIC18.93■□□□□ 0.62
USP41Q3LFD5 AD001527.2-201ENST00000622994 785 ntBASIC18.93■□□□□ 0.62
USP41Q3LFD5 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.93■□□□□ 0.62
USP41Q3LFD5 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
USP41Q3LFD5 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP41Q3LFD5 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USP41Q3LFD5 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
USP41Q3LFD5 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
USP41Q3LFD5 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.93■□□□□ 0.62
USP41Q3LFD5 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.93■□□□□ 0.62
USP41Q3LFD5 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP41Q3LFD5 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.92■□□□□ 0.62
USP41Q3LFD5 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP41Q3LFD5 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.92■□□□□ 0.62
USP41Q3LFD5 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
USP41Q3LFD5 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
USP41Q3LFD5 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.92■□□□□ 0.62
USP41Q3LFD5 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP41Q3LFD5 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
USP41Q3LFD5 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP41Q3LFD5 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP41Q3LFD5 LAGE3P1-201ENST00000425356 484 ntBASIC18.92■□□□□ 0.62
USP41Q3LFD5 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.92■□□□□ 0.62
USP41Q3LFD5 AC092865.5-201ENST00000545435 363 ntBASIC18.92■□□□□ 0.62
USP41Q3LFD5 AC027601.4-201ENST00000611259 610 ntBASIC18.92■□□□□ 0.62
USP41Q3LFD5 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC18.92■□□□□ 0.62
USP41Q3LFD5 AL022326.1-202ENST00000641533 845 ntBASIC18.92■□□□□ 0.62
USP41Q3LFD5 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
USP41Q3LFD5 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP41Q3LFD5 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP41Q3LFD5 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
USP41Q3LFD5 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP41Q3LFD5 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP41Q3LFD5 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
USP41Q3LFD5 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.92■□□□□ 0.62
USP41Q3LFD5 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP41Q3LFD5 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP41Q3LFD5 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
USP41Q3LFD5 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USP41Q3LFD5 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USP41Q3LFD5 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
USP41Q3LFD5 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.91■□□□□ 0.62
USP41Q3LFD5 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
USP41Q3LFD5 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
USP41Q3LFD5 COX5BP2-201ENST00000392354 334 ntBASIC18.91■□□□□ 0.62
USP41Q3LFD5 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP41Q3LFD5 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18.91■□□□□ 0.62
USP41Q3LFD5 BX005266.1-201ENST00000473402 457 ntBASIC18.91■□□□□ 0.62
USP41Q3LFD5 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC18.91■□□□□ 0.62
USP41Q3LFD5 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USP41Q3LFD5 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.91■□□□□ 0.62
USP41Q3LFD5 AC073592.4-201ENST00000623827 446 ntBASIC18.91■□□□□ 0.62
USP41Q3LFD5 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USP41Q3LFD5 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.91■□□□□ 0.62
USP41Q3LFD5 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
USP41Q3LFD5 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USP41Q3LFD5 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
USP41Q3LFD5 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP41Q3LFD5 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP41Q3LFD5 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
USP41Q3LFD5 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP41Q3LFD5 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP41Q3LFD5 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP41Q3LFD5 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.9■□□□□ 0.62
USP41Q3LFD5 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms