Protein–RNA interactions for Protein: P62987

UBA52, Ubiquitin-60S ribosomal protein L40, humanhuman

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBA52P62987 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
UBA52P62987 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC15.44■□□□□ 0.06
UBA52P62987 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
UBA52P62987 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC15.44■□□□□ 0.06
UBA52P62987 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC15.44■□□□□ 0.06
UBA52P62987 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
UBA52P62987 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
UBA52P62987 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC15.44■□□□□ 0.06
UBA52P62987 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC15.44■□□□□ 0.06
UBA52P62987 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
UBA52P62987 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
UBA52P62987 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
UBA52P62987 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC15.44■□□□□ 0.06
UBA52P62987 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC15.44■□□□□ 0.06
UBA52P62987 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC15.44■□□□□ 0.06
UBA52P62987 TOLLIP-AS1-201ENST00000530897 939 ntBASIC15.44■□□□□ 0.06
UBA52P62987 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC15.44■□□□□ 0.06
UBA52P62987 KRT126P-201ENST00000549467 1181 ntBASIC15.44■□□□□ 0.06
UBA52P62987 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC15.44■□□□□ 0.06
UBA52P62987 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC15.44■□□□□ 0.06
UBA52P62987 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC15.44■□□□□ 0.06
UBA52P62987 AC140113.3-201ENST00000605663 199 ntBASIC15.44■□□□□ 0.06
UBA52P62987 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
UBA52P62987 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
UBA52P62987 IER3-202ENST00000376377 1350 ntBASIC15.44■□□□□ 0.06
UBA52P62987 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
UBA52P62987 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
UBA52P62987 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC15.44■□□□□ 0.06
UBA52P62987 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
UBA52P62987 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC15.44■□□□□ 0.06
UBA52P62987 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
UBA52P62987 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
UBA52P62987 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
UBA52P62987 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC15.43■□□□□ 0.06
UBA52P62987 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
UBA52P62987 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC15.43■□□□□ 0.06
UBA52P62987 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
UBA52P62987 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
UBA52P62987 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC15.43■□□□□ 0.06
UBA52P62987 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC15.43■□□□□ 0.06
UBA52P62987 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
UBA52P62987 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
UBA52P62987 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
UBA52P62987 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
UBA52P62987 KRT18P48-201ENST00000434763 852 ntBASIC15.43■□□□□ 0.06
UBA52P62987 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC15.43■□□□□ 0.06
UBA52P62987 CA15P1-201ENST00000481698 905 ntBASIC15.43■□□□□ 0.06
UBA52P62987 FAM86EP-206ENST00000510506 987 ntBASIC15.43■□□□□ 0.06
UBA52P62987 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC15.43■□□□□ 0.06
UBA52P62987 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC15.43■□□□□ 0.06
UBA52P62987 AL160286.2-201ENST00000567150 934 ntBASIC15.43■□□□□ 0.06
UBA52P62987 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC15.43■□□□□ 0.06
UBA52P62987 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC15.43■□□□□ 0.06
UBA52P62987 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC15.43■□□□□ 0.06
UBA52P62987 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC15.43■□□□□ 0.06
UBA52P62987 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.06
UBA52P62987 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
UBA52P62987 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC15.43■□□□□ 0.06
UBA52P62987 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC15.43■□□□□ 0.06
UBA52P62987 SNAI3-AS1-205ENST00000568633 2096 ntBASIC15.43■□□□□ 0.06
UBA52P62987 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
UBA52P62987 AL162727.3-201ENST00000635661 2787 ntBASIC15.43■□□□□ 0.06
UBA52P62987 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC15.43■□□□□ 0.06
UBA52P62987 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
UBA52P62987 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC15.43■□□□□ 0.06
UBA52P62987 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC15.43■□□□□ 0.06
UBA52P62987 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
UBA52P62987 AL356309.3-201ENST00000624132 1934 ntBASIC15.43■□□□□ 0.06
UBA52P62987 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
UBA52P62987 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC15.43■□□□□ 0.06
UBA52P62987 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC15.43■□□□□ 0.06
UBA52P62987 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
UBA52P62987 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC15.43■□□□□ 0.06
UBA52P62987 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
UBA52P62987 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
UBA52P62987 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC15.42■□□□□ 0.06
UBA52P62987 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC15.42■□□□□ 0.06
UBA52P62987 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
UBA52P62987 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC15.42■□□□□ 0.06
UBA52P62987 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
UBA52P62987 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
UBA52P62987 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
UBA52P62987 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
UBA52P62987 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
UBA52P62987 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
UBA52P62987 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
UBA52P62987 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
UBA52P62987 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
UBA52P62987 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
UBA52P62987 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC15.42■□□□□ 0.06
UBA52P62987 AL671277.2-201ENST00000458060 996 ntBASIC15.42■□□□□ 0.06
UBA52P62987 AL359075.1-203ENST00000462729 1002 ntBASIC15.42■□□□□ 0.06
UBA52P62987 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
UBA52P62987 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC15.42■□□□□ 0.06
UBA52P62987 GLRB-205ENST00000512619 728 ntTSL 3 BASIC15.42■□□□□ 0.06
UBA52P62987 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC15.42■□□□□ 0.06
UBA52P62987 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC15.42■□□□□ 0.06
UBA52P62987 AC093458.2-201ENST00000623150 629 ntBASIC15.42■□□□□ 0.06
UBA52P62987 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC15.42■□□□□ 0.06
UBA52P62987 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC15.42■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms