Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AC132938.6-201ENST00000623828 1655 ntBASIC17.54■□□□□ 0.4
PKNOX1P55347 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
PKNOX1P55347 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PKNOX1P55347 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
PKNOX1P55347 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PKNOX1P55347 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PKNOX1P55347 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
PKNOX1P55347 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
PKNOX1P55347 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PKNOX1P55347 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PKNOX1P55347 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.54■□□□□ 0.4
PKNOX1P55347 AC011676.5-201ENST00000624864 2660 ntBASIC17.54■□□□□ 0.4
PKNOX1P55347 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.53■□□□□ 0.4
PKNOX1P55347 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
PKNOX1P55347 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.53■□□□□ 0.4
PKNOX1P55347 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PKNOX1P55347 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
PKNOX1P55347 NKILA-202ENST00000614771 2598 ntBASIC17.53■□□□□ 0.4
PKNOX1P55347 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
PKNOX1P55347 AC022898.2-201ENST00000616822 1312 ntBASIC17.53■□□□□ 0.4
PKNOX1P55347 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PKNOX1P55347 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
PKNOX1P55347 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
PKNOX1P55347 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
PKNOX1P55347 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
PKNOX1P55347 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.53■□□□□ 0.4
PKNOX1P55347 MMP23A-201ENST00000234610 1017 ntBASIC17.53■□□□□ 0.4
PKNOX1P55347 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PKNOX1P55347 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PKNOX1P55347 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.53■□□□□ 0.4
PKNOX1P55347 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
PKNOX1P55347 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
PKNOX1P55347 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
PKNOX1P55347 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.53■□□□□ 0.4
PKNOX1P55347 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.53■□□□□ 0.4
PKNOX1P55347 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.53■□□□□ 0.4
PKNOX1P55347 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.53■□□□□ 0.4
PKNOX1P55347 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.53■□□□□ 0.4
PKNOX1P55347 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PKNOX1P55347 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.53■□□□□ 0.4
PKNOX1P55347 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.53■□□□□ 0.4
PKNOX1P55347 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.53■□□□□ 0.4
PKNOX1P55347 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PKNOX1P55347 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PKNOX1P55347 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.53■□□□□ 0.4
PKNOX1P55347 KRT8P9-201ENST00000558927 1449 ntBASIC17.53■□□□□ 0.4
PKNOX1P55347 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
PKNOX1P55347 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PKNOX1P55347 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.53■□□□□ 0.4
PKNOX1P55347 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PKNOX1P55347 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
PKNOX1P55347 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.53■□□□□ 0.4
PKNOX1P55347 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PKNOX1P55347 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PKNOX1P55347 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.52■□□□□ 0.4
PKNOX1P55347 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
PKNOX1P55347 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
PKNOX1P55347 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PKNOX1P55347 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PKNOX1P55347 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PKNOX1P55347 AP000523.1-201ENST00000398242 1049 ntBASIC17.52■□□□□ 0.4
PKNOX1P55347 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
PKNOX1P55347 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PKNOX1P55347 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.52■□□□□ 0.4
PKNOX1P55347 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.52■□□□□ 0.4
PKNOX1P55347 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PKNOX1P55347 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.52■□□□□ 0.4
PKNOX1P55347 FAM87A-204ENST00000613235 858 ntBASIC17.52■□□□□ 0.4
PKNOX1P55347 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PKNOX1P55347 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PKNOX1P55347 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PKNOX1P55347 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
PKNOX1P55347 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
PKNOX1P55347 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.52■□□□□ 0.39
PKNOX1P55347 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PKNOX1P55347 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
PKNOX1P55347 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
PKNOX1P55347 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
PKNOX1P55347 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.39
PKNOX1P55347 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.39
PKNOX1P55347 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.52■□□□□ 0.39
PKNOX1P55347 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.52■□□□□ 0.39
PKNOX1P55347 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.51■□□□□ 0.39
PKNOX1P55347 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PKNOX1P55347 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms