Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC13.44□□□□□ -0.26
FOXA3P55318 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA3P55318 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC13.44□□□□□ -0.26
FOXA3P55318 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA3P55318 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA3P55318 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC13.44□□□□□ -0.26
FOXA3P55318 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA3P55318 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA3P55318 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA3P55318 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
FOXA3P55318 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC13.43□□□□□ -0.26
FOXA3P55318 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA3P55318 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
FOXA3P55318 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA3P55318 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA3P55318 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA3P55318 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
FOXA3P55318 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC13.43□□□□□ -0.26
FOXA3P55318 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC13.43□□□□□ -0.26
FOXA3P55318 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA3P55318 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA3P55318 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC13.43□□□□□ -0.26
FOXA3P55318 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA3P55318 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA3P55318 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA3P55318 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC13.43□□□□□ -0.26
FOXA3P55318 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA3P55318 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA3P55318 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA3P55318 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
FOXA3P55318 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC13.43□□□□□ -0.26
FOXA3P55318 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC13.43□□□□□ -0.26
FOXA3P55318 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA3P55318 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA3P55318 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA3P55318 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC13.43□□□□□ -0.26
FOXA3P55318 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA3P55318 AC079328.2-201ENST00000561241 3354 ntBASIC13.43□□□□□ -0.26
FOXA3P55318 KRT8P50-201ENST00000562022 1438 ntBASIC13.43□□□□□ -0.26
FOXA3P55318 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA3P55318 AC063926.3-201ENST00000624734 5658 ntBASIC13.43□□□□□ -0.26
FOXA3P55318 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC13.43□□□□□ -0.26
FOXA3P55318 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC13.43□□□□□ -0.26
FOXA3P55318 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC13.43□□□□□ -0.26
FOXA3P55318 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA3P55318 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA3P55318 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC13.43□□□□□ -0.26
FOXA3P55318 AC106886.4-201ENST00000623557 2502 ntBASIC13.43□□□□□ -0.26
FOXA3P55318 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
FOXA3P55318 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC13.43□□□□□ -0.26
FOXA3P55318 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA3P55318 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA3P55318 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA3P55318 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC13.43□□□□□ -0.26
FOXA3P55318 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC13.43□□□□□ -0.26
FOXA3P55318 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
FOXA3P55318 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA3P55318 NBPF21P-201ENST00000425093 1451 ntBASIC13.42□□□□□ -0.26
FOXA3P55318 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA3P55318 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC13.42□□□□□ -0.26
FOXA3P55318 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC13.42□□□□□ -0.26
FOXA3P55318 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA3P55318 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA3P55318 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC13.42□□□□□ -0.26
FOXA3P55318 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA3P55318 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
FOXA3P55318 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
FOXA3P55318 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA3P55318 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC13.42□□□□□ -0.26
FOXA3P55318 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA3P55318 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC13.42□□□□□ -0.26
FOXA3P55318 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
FOXA3P55318 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC13.42□□□□□ -0.26
FOXA3P55318 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
FOXA3P55318 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC13.42□□□□□ -0.26
FOXA3P55318 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
FOXA3P55318 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC13.42□□□□□ -0.26
FOXA3P55318 PRKY-204ENST00000533551 1019 ntBASIC13.42□□□□□ -0.26
FOXA3P55318 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA3P55318 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC13.42□□□□□ -0.26
FOXA3P55318 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC13.42□□□□□ -0.26
FOXA3P55318 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC13.42□□□□□ -0.26
FOXA3P55318 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
FOXA3P55318 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA3P55318 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
FOXA3P55318 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA3P55318 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA3P55318 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA3P55318 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA3P55318 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA3P55318 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA3P55318 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA3P55318 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC13.42□□□□□ -0.26
FOXA3P55318 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA3P55318 AC034236.2-201ENST00000606662 1610 ntBASIC13.42□□□□□ -0.26
FOXA3P55318 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA3P55318 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA3P55318 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA3P55318 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
FOXA3P55318 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms