Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.59■□□□□ 0.57
EPHB3P54753 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC18.59■□□□□ 0.57
EPHB3P54753 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.59■□□□□ 0.57
EPHB3P54753 AC073592.4-201ENST00000623827 446 ntBASIC18.59■□□□□ 0.57
EPHB3P54753 AC073592.5-201ENST00000624854 528 ntBASIC18.59■□□□□ 0.57
EPHB3P54753 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
EPHB3P54753 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
EPHB3P54753 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
EPHB3P54753 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
EPHB3P54753 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.59■□□□□ 0.57
EPHB3P54753 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.59■□□□□ 0.57
EPHB3P54753 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
EPHB3P54753 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
EPHB3P54753 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.59■□□□□ 0.57
EPHB3P54753 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
EPHB3P54753 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
EPHB3P54753 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.58■□□□□ 0.57
EPHB3P54753 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
EPHB3P54753 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
EPHB3P54753 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
EPHB3P54753 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
EPHB3P54753 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
EPHB3P54753 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.58■□□□□ 0.57
EPHB3P54753 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.57
EPHB3P54753 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
EPHB3P54753 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
EPHB3P54753 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
EPHB3P54753 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
EPHB3P54753 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
EPHB3P54753 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
EPHB3P54753 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
EPHB3P54753 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.58■□□□□ 0.56
EPHB3P54753 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.58■□□□□ 0.56
EPHB3P54753 PRYP5-201ENST00000451909 266 ntBASIC18.58■□□□□ 0.56
EPHB3P54753 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.58■□□□□ 0.56
EPHB3P54753 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
EPHB3P54753 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.58■□□□□ 0.56
EPHB3P54753 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC18.58■□□□□ 0.56
EPHB3P54753 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.58■□□□□ 0.56
EPHB3P54753 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.58■□□□□ 0.56
EPHB3P54753 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
EPHB3P54753 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.58■□□□□ 0.56
EPHB3P54753 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.58■□□□□ 0.56
EPHB3P54753 SIRPAP1-201ENST00000448467 1770 ntBASIC18.58■□□□□ 0.56
EPHB3P54753 SIGLEC16-201ENST00000599858 1437 ntBASIC18.57■□□□□ 0.56
EPHB3P54753 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.57■□□□□ 0.56
EPHB3P54753 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
EPHB3P54753 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC18.57■□□□□ 0.56
EPHB3P54753 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
EPHB3P54753 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
EPHB3P54753 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.57■□□□□ 0.56
EPHB3P54753 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
EPHB3P54753 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
EPHB3P54753 AC135776.1-201ENST00000319817 2481 ntBASIC18.57■□□□□ 0.56
EPHB3P54753 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
EPHB3P54753 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
EPHB3P54753 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.57■□□□□ 0.56
EPHB3P54753 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
EPHB3P54753 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
EPHB3P54753 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.57■□□□□ 0.56
EPHB3P54753 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
EPHB3P54753 KRT18P13-201ENST00000400056 1290 ntBASIC18.57■□□□□ 0.56
EPHB3P54753 SPDYE21P-201ENST00000413323 827 ntBASIC18.57■□□□□ 0.56
EPHB3P54753 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.57■□□□□ 0.56
EPHB3P54753 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
EPHB3P54753 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.57■□□□□ 0.56
EPHB3P54753 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC18.57■□□□□ 0.56
EPHB3P54753 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
EPHB3P54753 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.57■□□□□ 0.56
EPHB3P54753 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
EPHB3P54753 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.57■□□□□ 0.56
EPHB3P54753 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
EPHB3P54753 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
EPHB3P54753 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC18.57■□□□□ 0.56
EPHB3P54753 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
EPHB3P54753 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
EPHB3P54753 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
EPHB3P54753 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
EPHB3P54753 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
EPHB3P54753 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.57■□□□□ 0.56
EPHB3P54753 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
EPHB3P54753 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.57■□□□□ 0.56
EPHB3P54753 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
EPHB3P54753 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.56■□□□□ 0.56
EPHB3P54753 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
EPHB3P54753 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
EPHB3P54753 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
EPHB3P54753 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
EPHB3P54753 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
EPHB3P54753 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
EPHB3P54753 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
EPHB3P54753 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.56■□□□□ 0.56
EPHB3P54753 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
EPHB3P54753 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
EPHB3P54753 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
EPHB3P54753 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
EPHB3P54753 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
EPHB3P54753 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.56■□□□□ 0.56
EPHB3P54753 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
EPHB3P54753 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms